Beyond Boolean: Ternary networks and dynamics

Author:

Yao Yu-Xiang12ORCID,Dong Jia-Qi1ORCID,Zhu Jie-Ying2,Huang Liang1ORCID,Pei Duan-Qing3ORCID,Lai Ying-Cheng45ORCID

Affiliation:

1. Lanzhou Center for Theoretical Physics and Key Laboratory of Theoretical Physics of Gansu Province, Lanzhou University, Lanzhou, Gansu 730000, China

2. South China Institute for Stem Cell Biology and Regenerative Medicine, Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences, Guangzhou, Guangdong 510530, China

3. Laboratory of Cell Fate Control, School of Life Sciences, Westlake University, Hangzhou, Zhejiang 310024, China

4. School of Electrical, Computer and Energy Engineering, Arizona State University, Tempe, Arizona 85287, USA

5. Department of Physics, Arizona State University, Tempe, Arizona 85287, USA

Abstract

Boolean networks introduced by Kauffman, originally intended as a prototypical model for gaining insights into gene regulatory dynamics, have become a paradigm for understanding a variety of complex systems described by binary state variables. However, there are situations, e.g., in biology, where a binary state description of the underlying dynamical system is inadequate. We propose random ternary networks and investigate the general dynamical properties associated with the ternary discretization of the variables. We find that the ternary dynamics can be either ordered or disordered with a positive Lyapunov exponent, and the boundary between them in the parameter space can be determined analytically. A dynamical event that is key to determining the boundary is the emergence of an additional fixed point for which we provide numerical verification. We also find that the nodes playing a pivotal role in shaping the system dynamics have characteristically distinct behaviors in different regions of the parameter space, and, remarkably, the boundary between these regions coincides with that separating the ordered and disordered dynamics. Overall, our framework of ternary networks significantly broadens the classical Boolean paradigm by enabling a quantitative description of richer and more complex dynamical behaviors.

Funder

National Key Research and Development Program of China

National Natural Science Foundation of China

111 Project

Air Force Office of Scientific Research

Publisher

AIP Publishing

Subject

Applied Mathematics,General Physics and Astronomy,Mathematical Physics,Statistical and Nonlinear Physics

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