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Blind prediction of protein B-factor and flexibility

Published:2018-10-07 Issue:13 Volume:149 Page:134107
ISSN:0021-9606
Container-title:The Journal of Chemical Physics
language:en
Short-container-title:The Journal of Chemical Physics

Author:

Bramer David¹,Wei Guo-Wei¹²³

Affiliation:

1. Department of Mathematics, Michigan State University, East Lansing, Michigan 48824, USA

2. Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, Michigan 48824, USA

3. Department of Electrical and Computer Engineering, Michigan State University, East Lansing, Michigan 48824, USA

Funder

National Institute of General Medical Sciences

Division of Mathematical Sciences

Publisher

AIP Publishing

Subject

Physical and Theoretical Chemistry,General Physics and Astronomy

Link

http://aip.scitation.org/doi/am-pdf/10.1063/1.5048469

Reference23 articles.

1. Usefulness and Limitations of Normal Mode Analysis in Modeling Dynamics of Biomolecular Complexes

2. The Energy Landscapes and Motions of Proteins

3. Normal vibrations of proteins: Glucagon

4. CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

5. Protein normal-mode dynamics: Trypsin inhibitor, crambin, ribonuclease and lysozyme

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1. OPUS-BFactor: Predicting protein B-factor with sequence and structure information;2024-07-19

2. Using graphlet degree vectors to predict atomic displacement parameters in protein structures;Acta Crystallographica Section D Structural Biology;2023-11-21

3. pLDDT Values in AlphaFold2 Protein Models Are Unrelated to Globular Protein Local Flexibility;Crystals;2023-11-01

4. B-factor prediction in proteins using a sequence-based deep learning model;Patterns;2023-09

5. Persistent Homology for RNA Data Analysis;Methods in Molecular Biology;2023

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