Accelerating the density-functional tight-binding method using graphical processing units

Author:

Vuong Van-Quan1ORCID,Cevallos Caterina2ORCID,Hourahine Ben3ORCID,Aradi Bálint4ORCID,Jakowski Jacek5ORCID,Irle Stephan5ORCID,Camacho Cristopher2ORCID

Affiliation:

1. Bredesen Center for Interdisciplinary Research and Graduate Education, University of Tennessee 1 , Knoxville, Tennessee 37996, USA

2. School of Chemistry, University of Costa Rica 2 , San José 11501-2060, Costa Rica

3. SUPA, Department of Physics 3 , The John Anderson Building, 107 Rottenrow East, Glasgow G4 0NG, United Kingdom

4. Bremen Center for Computational Materials Science, Universität Bremen 4 , Bremen, Germany

5. Computational Sciences and Engineering Division, Oak Ridge National Laboratory 5 , Oak Ridge, Tennessee 37831, USA

Abstract

Acceleration of the density-functional tight-binding (DFTB) method on single and multiple graphical processing units (GPUs) was accomplished using the MAGMA linear algebra library. Two major computational bottlenecks of DFTB ground-state calculations were addressed in our implementation: the Hamiltonian matrix diagonalization and the density matrix construction. The code was implemented and benchmarked on two different computer systems: (1) the SUMMIT IBM Power9 supercomputer at the Oak Ridge National Laboratory Leadership Computing Facility with 1–6 NVIDIA Volta V100 GPUs per computer node and (2) an in-house Intel Xeon computer with 1–2 NVIDIA Tesla P100 GPUs. The performance and parallel scalability were measured for three molecular models of 1-, 2-, and 3-dimensional chemical systems, represented by carbon nanotubes, covalent organic frameworks, and water clusters.

Funder

U.S. Department of Energy

Vicerrectoría de Investigación, Universidad de Costa Rica

Publisher

AIP Publishing

Subject

Physical and Theoretical Chemistry,General Physics and Astronomy

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