Variational deep learning of equilibrium transition path ensembles

Author:

Singh Aditya N.12ORCID,Limmer David T.1234ORCID

Affiliation:

1. Department of Chemistry, University of California 1 , Berkeley, California 94720, USA

2. Chemical Sciences Division, Lawrence Berkeley National Laboratory 2 , Berkeley, California 94720, USA

3. Materials Science Division, Lawrence Berkeley National Laboratory 3 , Berkeley, California 94720, USA

4. Kavli Energy Nanoscience Institute at Berkeley 4 , Berkeley, California 94720, USA

Abstract

We present a time-dependent variational method to learn the mechanisms of equilibrium reactive processes and efficiently evaluate their rates within a transition path ensemble. This approach builds off of the variational path sampling methodology by approximating the time-dependent commitment probability within a neural network ansatz. The reaction mechanisms inferred through this approach are elucidated by a novel decomposition of the rate in terms of the components of a stochastic path action conditioned on a transition. This decomposition affords an ability to resolve the typical contribution of each reactive mode and their couplings to the rare event. The associated rate evaluation is variational and systematically improvable through the development of a cumulant expansion. We demonstrate this method in both over- and under-damped stochastic equations of motion, in low-dimensional model systems, and in the isomerization of a solvated alanine dipeptide. In all examples, we find that we can obtain quantitatively accurate estimates of the rates of the reactive events with minimal trajectory statistics and gain unique insights into transitions through the analysis of their commitment probability.

Funder

Advanced Scientific Computing Research

Publisher

AIP Publishing

Subject

Physical and Theoretical Chemistry,General Physics and Astronomy

Cited by 2 articles. 订阅此论文施引文献 订阅此论文施引文献,注册后可以免费订阅5篇论文的施引文献,订阅后可以查看论文全部施引文献

1. Probing reaction channels via reinforcement learning;Machine Learning: Science and Technology;2023-10-06

2. Perspective: How to overcome dynamical density functional theory;Journal of Physics: Condensed Matter;2023-04-19

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