GPUMD: A package for constructing accurate machine-learned potentials and performing highly efficient atomistic simulations

Author:

Fan Zheyong1ORCID,Wang Yanzhou23,Ying Penghua4ORCID,Song Keke3,Wang Junjie5ORCID,Wang Yong5,Zeng Zezhu6ORCID,Xu Ke7ORCID,Lindgren Eric8ORCID,Rahm J. Magnus8,Gabourie Alexander J.9ORCID,Liu Jiahui3,Dong Haikuan13ORCID,Wu Jianyang7,Chen Yue6ORCID,Zhong Zheng4ORCID,Sun Jian5ORCID,Erhart Paul8ORCID,Su Yanjing3,Ala-Nissila Tapio210ORCID

Affiliation:

1. College of Physical Science and Technology, Bohai University, Jinzhou 121013, People’s Republic of China

2. MSP Group, QTF Centre of Excellence, Department of Applied Physics, Aalto University, FI-00076 Aalto, Espoo, Finland

3. Beijing Advanced Innovation Center for Materials Genome Engineering, University of Science and Technology Beijing, Beijing 100083, China

4. School of Science, Harbin Institute of Technology, Shenzhen 518055, People’s Republic of China

5. National Laboratory of Solid State Microstructures, School of Physics and Collaborative Innovation Center of Advanced Microstructures, Nanjing University, Nanjing 210093, China

6. Department of Mechanical Engineering, The University of Hong Kong, Pokfulam Road, Hong Kong SAR, China

7. Department of Physics, Research Institute for Biomimetics and Soft Matter, Jiujiang Research Institute and Fujian Provincial Key Laboratory for Soft Functional Materials Research, Xiamen University, Xiamen 361005, People’s Republic of China

8. Chalmers University of Technology, Department of Physics, 41926 Gothenburg, Sweden

9. Department of Electrical Engineering, Stanford University, Stanford, California 94305, USA

10. Interdisciplinary Centre for Mathematical Modelling, Department of Mathematical Sciences, Loughborough University, Loughborough, Leicestershire LE11 3TU, United Kingdom

Abstract

We present our latest advancements of machine-learned potentials (MLPs) based on the neuroevolution potential (NEP) framework introduced in Fan et al. [Phys. Rev. B 104, 104309 (2021)] and their implementation in the open-source package gpumd. We increase the accuracy of NEP models both by improving the radial functions in the atomic-environment descriptor using a linear combination of Chebyshev basis functions and by extending the angular descriptor with some four-body and five-body contributions as in the atomic cluster expansion approach. We also detail our efficient implementation of the NEP approach in graphics processing units as well as our workflow for the construction of NEP models and demonstrate their application in large-scale atomistic simulations. By comparing to state-of-the-art MLPs, we show that the NEP approach not only achieves above-average accuracy but also is far more computationally efficient. These results demonstrate that the gpumd package is a promising tool for solving challenging problems requiring highly accurate, large-scale atomistic simulations. To enable the construction of MLPs using a minimal training set, we propose an active-learning scheme based on the latent space of a pre-trained NEP model. Finally, we introduce three separate Python packages, viz., gpyumd, calorine, and pynep, that enable the integration of gpumd into Python workflows.

Funder

National Natural Science Foundation of China

National Key Research and Development Program of China

Academy of Finland

Swedish Research Council

Swedish Foundation for Strategic Research

Publisher

AIP Publishing

Subject

Physical and Theoretical Chemistry,General Physics and Astronomy

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