Targeting pediatric cancers via T-cell recognition of the monomorphic MHC class I-related protein MR1

Author:

Cornel Annelisa M.ORCID,van der Sman Loutje,van Dinter Jip T,Arrabito Marta,Dunnebach Ester,van Hoesel Marliek,Kluiver Thomas A,Lopes Ana P,Dautzenberg Noël M M,Dekker Linde,van Rijn Jorik M,van den Beemt Denise A M H,Buhl Juliane L,du Chatinier Aimee,Barneh Farnaz,Lu Yuyan,Lo Nigro Luca,Krippner-Heidenreich Anja,Sebestyén Zsolt,Kuball JurgenORCID,Hulleman Esther,Drost Jarno,van Heesch Sebastiaan,Heidenreich Olaf T,Peng Weng Chuan,Nierkens Stefan

Abstract

Human leukocyte antigen (HLA) restriction of conventional T-cell targeting introduces complexity in generating T-cell therapy strategies for patients with cancer with diverse HLA-backgrounds. A subpopulation of atypical, major histocompatibility complex-I related protein 1 (MR1)-restricted T-cells, distinctive from mucosal-associated invariant T-cells (MAITs), was recently identified recognizing currently unidentified MR1-presented cancer-specific metabolites. It is hypothesized that the MC.7.G5 MR1T-clone has potential as a pan-cancer, pan-population T-cell immunotherapy approach. These cells are irresponsive to healthy tissue while conferring T-cell receptor(TCR) dependent, HLA-independent cytotoxicity to a wide range of adult cancers. Studies so far are limited to adult malignancies. Here, we investigated the potential of MR1-targeting cellular therapy strategies in pediatric cancer. Bulk RNA sequencing data of primary pediatric tumors were analyzed to assessMR1expression.In vitropediatric tumor models were subsequently screened to evaluate their susceptibility to engineered MC.7.G5 TCR-expressing T-cells. Targeting capacity was correlated with qPCR-basedMR1mRNA and protein overexpression. RNA expression ofMR1in primary pediatric tumors varied widely within and between tumor entities. Notably, embryonal tumors exhibited significantly lowerMR1expression than other pediatric tumors. In line with this, most screened embryonal tumors displayed resistance to MR1T-targetingin vitro. MR1T susceptibility was observed particularly in pediatric leukemia and diffuse midline glioma models. This study demonstrates potential of MC.7.G5 MR1T-cell immunotherapy in pediatric leukemias and diffuse midline glioma, while activity against embryonal tumors was limited. The dismal prognosis associated with relapsed/refractory leukemias and high-grade brain tumors highlights the promise to improve survival rates of children with these cancers.

Funder

Villa Joep Foundation

Publisher

BMJ

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