Complete genome sequence resource of <i>Pantoea anthophila</i> CL1 causing soft rot disease in <i>Clausena lansium</i> (Wampee) in China-Reference-Cited by-同舟云学术

Complete genome sequence resource of Pantoea anthophila CL1 causing soft rot disease in Clausena lansium (Wampee) in China

Published:2022-11-28 Issue: Volume: Page:
ISSN:0191-2917
Container-title:Plant Disease
language:en
Short-container-title:Plant Disease

Author:

He Qian¹,Li Juming²,Liu Qingmei³,Li Yonglin⁴,Liao Xinyue⁵,Zhou Jianuan⁶,Zhou Xiaofan²

Affiliation:

1. South China Agricultural University, 12526, Guangdong Province Key Laboratory of Microbial Signals and Disease Control, Guangzhou, China;

2. South China Agricultural University, 12526, Guangdong Province Key Laboratory of Microbial Signals and Disease Control , Guangzhou, Guangdong, China;

3. South China Agricultural University, 12526, Guangdong Province Key Laboratory of Microbial Signals and Disease Control, 483 Wushan road , Tianhe district , Guangzhou , 510642 , China, Guangzhou, China, 510642;

4. South China Agricultural University, 12526, Guangdong Province Key Laboratory of Microbial Signals and Disease Control Guangzhou, Guangzhou, Guangdong, China;

5. South China Agricultural University, 12526, Integrative Microbiology Research Centre, South China Agricultural University, Guangzhou, Guangdong, China;

6. South China Agricultural University, 12526, Guangdong Province Key Laboratory of Microbial Signals and Disease Control Guangzhou, Guangzhou, Guangdong, China, ;

Abstract

Pantoea anthophila CL1 is a causal agent of soft rot disease in Clausena lansium (Wampee) in China, and has inhibitory activity against the bacterial wilt pathogen Ralstonia solanacearum. Here we report the genome sequencing and analysis of P. anthophila CL1, representing the first complete genome resource of the species. The CL1 genome consists of four circular replicons (one chromosome and three plasmids) with a total size of 4,594,065 bp, and contains 4,109 protein-coding genes and 106 RNA genes. Our bioinformatic analysis of CL1 predicted 228 virulence factors, two Type VI Secretion Systems, and six secondary metabolite biosynthesis gene clusters producing saccharides, siderophores, and terpene. The complete genome sequence of P. anthophila CL1 provides a solid foundation for further investigation of its pathogenesis and antimicrobial activity, and also represents a valuable resource for the comparative genomics of Pantoea.

Publisher

Scientific Societies

Subject

Plant Science,Agronomy and Crop Science

Link

https://apsjournals.apsnet.org/doi/pdf/10.1094/PDIS-10-22-2504-A

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