A Genome Resource for 192 <i>Verticillium dahliae</i> Isolates Infecting Potatoes Across Canada-Reference-Cited by-同舟云学术

A Genome Resource for 192 Verticillium dahliae Isolates Infecting Potatoes Across Canada

Published:2023-11-08 Issue: Volume: Page:
ISSN:2690-5442
Container-title:PhytoFrontiers™
language:en
Short-container-title:PhytoFrontiers™

Author:

Arseneault Tanya¹,Lafond-Lapalme Joël¹,Gonzalez Chary Esteban Quinche¹,Jordan Katerina S.²,Yevtushenko Dmytro³,Barrett Ryan⁴,Van der Heyden Hervé⁵^ORCID,Chen Dahu⁶^ORCID,Tenuta Mario⁷^ORCID,Mimee Benjamin¹^ORCID

Affiliation:

1. Saint-Jean-sur-Richelieu Research and Development Centre, Agriculture and Agri-Food Canada, Saint-Jean-sur-Richelieu, QC, J3B 3E6, Canada

2. Department of Plant Agriculture, University of Guelph, Guelph, ON, N1G 3B9, Canada

3. Department of Biological Science, University of Lethbridge, Lethbridge, AB, T1K 3M4, Canada

4. Prince Edward Island Potato Board, 90 Hillstrom Ave, Charlottetown, PE, C1E 2C6, Canada

5. Compagnie de recherche Phytodata, Sherrington, QC, J0L 2N0, Canada

6. Fredericton Research and Development Centre, Agriculture and Agri-Food Canada, Fredericton, NB, E3B 4Z7, Canada

7. Department of Soil Science, University of Manitoba, Winnipeg, MB, R3T 2N2, Canada

Abstract

Verticillium dahliae is an important soilborne pathogen causing Verticillium wilt. It is also the primary causal agent of potato early dying, a disease complex involving the root-lesion nematode. Here, we report the whole-genome sequencing of 192 isolates of V. dahliae originating from the major potato production areas across Canada. Our results yielded a resource of 277,010 genetic variations that will be useful for genetic analyses and revealed the presence of two major lineages, both present in all provinces but exhibiting differences in regional prevalence. [Formula: see text] Copyright © 2023 His Majesty the King in Right of Canada, as represented by the Minister of Agriculture and Agri-Food Canada. This is an open access article distributed under the CC BY-NC-ND 4.0 International license .

Funder

Agriculture and Agri-Food Canada

Publisher

Scientific Societies

Subject

General Medicine

Link

https://apsjournals.apsnet.org/doi/pdf/10.1094/PHYTOFR-03-23-0041-A

Reference22 articles.

1. Genetic Differentiation of Verticillium dahliae Populations Recovered from Symptomatic and Asymptomatic Hosts

2. Key Insights and Research Prospects at the Dawn of the Population Genomics Era for Verticillium dahliae

3. Molecular Variability Within and Among Verticillium dahliae Vegetative Compatibility Groups Determined by Fluorescent Amplified Fragment Length Polymorphism and Polymerase Chain Reaction Markers

4. Twelve years of SAMtools and BCFtools

5. Molecular Characterization of Vegetative Compatibility Group 4A and 4B Isolates of Verticillium dahliae Associated with Potato Early Dying

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