CHiCAGO: robust detection of DNA looping interactions in Capture Hi-C data-Reference-Cited by-同舟云学术

CHiCAGO: robust detection of DNA looping interactions in Capture Hi-C data

Published:2016-06-15 Issue:1 Volume:17 Page:
ISSN:1474-760X
Container-title:Genome Biology
language:en
Short-container-title:Genome Biol

Author:

Cairns Jonathan,Freire-Pritchett Paula,Wingett Steven W.,Várnai Csilla,Dimond Andrew,Plagnol Vincent,Zerbino Daniel,Schoenfelder Stefan,Javierre Biola-Maria,Osborne Cameron,Fraser Peter,Spivakov Mikhail

Funder

Biotechnology and Biological Sciences Research Council (GB)

Publisher

Springer Science and Business Media LLC

Link

http://link.springer.com/content/pdf/10.1186/s13059-016-0992-2

Reference62 articles.

1. Dekker J, Marti-Renom MA, Mirny LA. Exploring the three-dimensional organization of genomes: interpreting chromatin interaction data. Nat Rev Genet. 2013;14:390–403.

2. van Steensel B, Dekker J. Genomics tools for unraveling chromosome architecture. Nat Biotechnol. 2010;28:1089–95.

3. Mifsud B, Tavares-Cadete F, Young AN, Sugar R, Schoenfelder S, Ferreira L, et al. Mapping long-range promoter contacts in human cells with high-resolution capture Hi-C. Nat Genet. 2015;47:598–606.

4. Schoenfelder S, Furlan-Magaril M, Mifsud B, Tavares-Cadete F, Sugar R, Javierre BM, et al. The pluripotent regulatory circuitry connecting promoters to their long-range interacting elements. Genome Res. 2015;25:582–97.

5. Schoenfelder S, Sugar R, Dimond A, Javierre BM, Armstrong H, Mifsud B, et al. Polycomb repressive complex PRC1 spatially constrains the mouse embryonic stem cell genome. Nat Genet. 2015;47:1179–86.

Cited by 358 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Anti-phase clustering of regulatory factors shapes gene bursting;2024-09-11

2. Three-dimensional chromatin mapping of sensory neurons reveals that promoter–enhancer looping is required for axonal regeneration;Proceedings of the National Academy of Sciences;2024-09-10

3. Developmental DNA demethylation is a determinant of neural stem cell identity and gliogenic competence;Science Advances;2024-08-30

4. Variant-to-function mapping of late-onset Alzheimer’s disease GWAS signals in human microglial cell models implicatesRTFDC1at theCASS4locus;2024-08-22

5. The long-range gene regulatory landscape of cerebellar granule neuron progenitors;2024-08-22