Sequence artefacts in a prospective series of formalin-fixed tumours tested for mutations in hotspot regions by massively parallel sequencing

Author:

Wong Stephen Q,Li Jason,Tan Angela Y-C,Vedururu Ravikiran,Pang Jia-Min B,Do Hongdo,Ellul Jason,Doig Ken,Bell Anthony,McArthur Grant A,Fox Stephen B,Thomas David M,Fellowes Andrew,Parisot John P,Dobrovic Alexander,

Publisher

Springer Science and Business Media LLC

Subject

Genetics(clinical),Genetics

Reference31 articles.

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2. Macconaill LE, Garraway LA: Clinical implications of the cancer genome. J Clin Oncol. 2010, 28 (35): 5219-5228. 10.1200/JCO.2009.27.4944.

3. Mar VJ, Wong SQ, Li J, Scolyer RA, McLean C, Papenfuss AT, Tothill RW, Kakavand H, Mann GJ, Thompson JF, Behren A, Cebon JS, Wolfe R, Kelly JW, Dobrovic A, McArthur GA: BRAF/NRAS wild-type melanomas have a high mutation load correlating with histologic and molecular signatures of UV damage. Clin Cancer Res. 2013, 19: 4589-4598. 10.1158/1078-0432.CCR-13-0398.

4. Wagle N, Berger MF, Davis MJ, Blumenstiel B, Defelice M, Pochanard P, Ducar M, Van Hummelen P, Macconaill LE, Hahn WC, Meyerson M, Gabriel SB, Garraway LA: High-throughput detection of actionable genomic alterations in clinical tumor samples by targeted, massively parallel sequencing. Cancer discovery. 2012, 2 (1): 82-93. 10.1158/2159-8290.CD-11-0184.

5. Berg D, Malinowsky K, Reischauer B, Wolff C, Becker KF: Use of formalin-fixed and paraffin-embedded tissues for diagnosis and therapy in routine clinical settings. Methods Mol Biol. 2011, 785: 109-122. 10.1007/978-1-61779-286-1_8.

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