rpoB, a promising marker for analyzing the diversity of bacterial communities by amplicon sequencing
Author:
Funder
Health Plant and Environment Department, INRA
MEM metaprogram, INRA
Publisher
Springer Science and Business Media LLC
Subject
Microbiology (medical),Microbiology
Link
http://link.springer.com/content/pdf/10.1186/s12866-019-1546-z.pdf
Reference47 articles.
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3. Quast C, Pruesse E, Yilmaz P, Gerken J, Schweer T, Yarza P, et al. The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Res. 2013;41:D590–6.
4. Schirmer M, Ijaz UZ, D’Amore R, Hall N, Sloan WT, Quince C. Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform. Nucleic Acids Res. 2015;43:e37.
5. Kennedy K, Hall MW, Lynch MD, Moreno-Hagelsieb G, Neufeld JD. Evaluating bias of Illumina-based bacterial 16S rRNA gene profiles. Appl Environ Microbiol. 2014;80:5717–22.
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