First gene-ontology enrichment analysis based on bacterial coregenome variants: insights into adaptations of Salmonella serovars to mammalian- and avian-hosts-Reference-Cited by-同舟云学术

First gene-ontology enrichment analysis based on bacterial coregenome variants: insights into adaptations of Salmonella serovars to mammalian- and avian-hosts

Published:2017-11-28 Issue:1 Volume:17 Page:
ISSN:1471-2180
Container-title:BMC Microbiology
language:en
Short-container-title:BMC Microbiol

Author:

Felten Arnaud,Vila Nova Meryl,Durimel Kevin,Guillier Laurent,Mistou Michel-Yves,Radomski Nicolas^ORCID

Funder

Horizon 2020

Publisher

Springer Science and Business Media LLC

Subject

Microbiology (medical),Microbiology

Link

http://link.springer.com/content/pdf/10.1186/s12866-017-1132-1.pdf

Reference88 articles.

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2. McKenna A, Hanna M, Banks E, Sivachenko A, Cibulskis K, Kernytsky A, et al. The genome analysis toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res. 2010;20:1297–303.

3. Yang Z, Rannala B. Molecular phylogenetics: principles and practice. Nat. Rev. Genet. 2012;13:303–14.

4. Zhou Z, McCann A, Litrup E, Murphy R, Cormican M, Fanning S, et al. Neutral genomic microevolution of a recently emerged pathogen, salmonella enterica Serovar Agona. Casadesús J, editor. PLoS Genet 2013;9:e1003471.

5. Didelot X, Wilson DJ. ClonalFrameML: efficient inference of recombination in whole bacterial genomes. Prlic A, editor. PLoS Comput Biol 2015;11:e1004041.

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