Clustering of reads with alignment-free measures and quality values-Reference-Cited by-同舟云学术

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Clustering of reads with alignment-free measures and quality values

Published:2015-01-28 Issue:1 Volume:10 Page:
ISSN:1748-7188
Container-title:Algorithms for Molecular Biology
language:en
Short-container-title:Algorithms Mol Biol

Author:

Comin Matteo,Leoni Andrea,Schimd Michele

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computational Theory and Mathematics,Molecular Biology,Structural Biology

Link

http://link.springer.com/content/pdf/10.1186/s13015-014-0029-x.pdf

Reference36 articles.

1. Medini D, Serruto D, Parkhill J, Relman DA, Donati C, Moxon R, et al. Microbiology in the post-genomic era. Nat Rev Microbiol. 2008; 6:419–30.

2. Jothi R, Cuddapah S, Barski A, Cui K, Zhao K. Genome-wide identification of in vivo protein–dna binding sites from chip-seq data. Nucleic Acids Res. 2008; 36:5221–31.

3. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. Basic local alignment search tool. J Mol Biol. 1990; 215:403–10.

4. Sims GE, Jun S-R, Wu GA, Kim S-H. Alignment-free genome comparison with feature frequency profiles (ffp) and optimal resolutions. Proc Nat Acad Sci. 2009; 106:2677–82.

5. Comin M, Verzotto D. Whole-genome phylogeny by virtue of unic subwords. In: 23rd international workshop on Database and EXpert systems Applications (DEXA 2012): 2012. p. 190–194.

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