Best hits of 11110110111: model-free selection and parameter-free sensitivity calculation of spaced seeds
Author:
Funder
INRIA
Publisher
Springer Science and Business Media LLC
Subject
Applied Mathematics,Computational Theory and Mathematics,Molecular Biology,Structural Biology
Link
http://link.springer.com/content/pdf/10.1186/s13015-017-0092-1.pdf
Reference92 articles.
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2. Chung WH, Park SB. Hit integration for identifying optimal spaced seeds. BMC Bioinform. 2010;11(1):S37.
3. Ma B, Tromp J, Li M. PatternHunter: faster and more sensitive homology search. Bioinformatics. 2002;18(3):440–5.
4. Burkhardt S, Kärkkäinen J. Better filtering with gapped $$q$$ q -grams. Fund Inform. 2002;56(1—-2):51–70.
5. Brejová B, Brown DG, Vinař T. Vector seeds: an extension to spaced seeds. J Comput Syst Sci. 2005;70(3):364–80.
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