Models and algorithms for genome rearrangement with positional constraints-Reference-Cited by-同舟云学术

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Models and algorithms for genome rearrangement with positional constraints

Published:2016-05-17 Issue:1 Volume:11 Page:
ISSN:1748-7188
Container-title:Algorithms for Molecular Biology
language:en
Short-container-title:Algorithms Mol Biol

Author:

Swenson Krister M.,Simonaitis Pijus,Blanchette Mathieu

Funder

Fonds de Recherche du Québec - Nature et Technologies

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computational Theory and Mathematics,Molecular Biology,Structural Biology

Link

http://link.springer.com/content/pdf/10.1186/s13015-016-0065-9

Reference28 articles.

1. Fertin G, Labarre A, Rusu I, Tannier E, Vialette S. Combinatorics of genome rearrangements. Cambridge: MIT press; 2009.

2. Blin G, Fertin G, Sikora F, Vialette S. The exemplar breakpoint distance for non-trivial genomes cannot be approximated. WALCOM: algorithms and computation. Berlin: Springer; 2009. p. 357–68.

3. Jiang M. The zero exemplar distance problem. J Comput Biol. 2011;18(9):1077–86.

4. Bergeron A, Mixtacki J, Stoye J. A unifying view of genome rearrangements. In: Bucher P, Moret BME, editors. Proceedings of 6th international workshop algorithms in bioinformatics (WABI’06). Lecture notes in computer science. vol. 4175. Berlin: Springer; 2006. p. 163–73.

5. Yancopoulos S, Attie O, Friedberg R. Efficient sorting of genomic permutations by translocation, inversion and block interchange. Bioinformatics. 2005;21(16):3340–6.

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1. Rearrangement Distance Problems: An updated survey;ACM Computing Surveys;2024-04-26

2. Genome Rearrangement Analysis;Methods in Molecular Biology;2024

3. A general framework for genome rearrangement with biological constraints;Algorithms for Molecular Biology;2019-07-19

4. Large-scale mammalian genome rearrangements coincide with chromatin interactions;Bioinformatics;2019-07

5. Position and Content Paradigms in Genome Rearrangements: The Wild and Crazy World of Permutations in Genomics;Bulletin of Mathematical Biology;2018-10-04

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