Reconciling multiple genes trees via segmental duplications and losses-Reference-Cited by-同舟云学术

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Reconciling multiple genes trees via segmental duplications and losses

Published:2019-03-20 Issue:1 Volume:14 Page:
ISSN:1748-7188
Container-title:Algorithms for Molecular Biology
language:en
Short-container-title:Algorithms Mol Biol

Author:

Dondi Riccardo,Lafond Manuel^ORCID,Scornavacca Celine

Funder

Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computational Theory and Mathematics,Molecular Biology,Structural Biology

Link

http://link.springer.com/content/pdf/10.1186/s13015-019-0139-6.pdf

Reference30 articles.

1. Bansal MS, Eulenstein O. The multiple gene duplication problem revisited. Bioinformatics. 2008;24(13):132–8.

2. Butler G, Rasmussen MD, Lin MF, Santos Manuel AS, Sakthikumar S, Munro CA, Rheinbay E, Grabherr M, Forche A, Reedy JL, et al. Evolution of pathogenicity and sexual reproduction in eight candida genomes. Nature. 2009;459(7247):657.

3. Cedric C, Nadia E-M. New perspectives on gene family evolution: losses in reconciliation and a link with supertrees. In: Annual international conference on research in computational molecular biology. Springer; 2009. p. 46–58.

4. Chauve C, Ponty Y, Zanetti JPP. Evolution of genes neighborhood within reconciled phylogenies: an ensemble approach. In: Brazilian symposium on bioinformatics. Springer; 2014. p. 49–56.

5. Chauve C, Rafiey A, Davin AA, Scornavacca C, Veber P, Boussau B, Szollosi G, Daubin V, Tannier E. Maxtic: fast ranking of a phylogenetic tree by maximum time consistency with lateral gene transfers. bioRxiv, 2017. https://www.biorxiv.org/content/early/2017/11/07/127548 .

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1. Synesth: Comprehensive Syntenic Reconciliation with Unsampled Lineages;Algorithms;2024-04-29

2. Unifying duplication episode clustering and gene-species mapping inference;Algorithms for Molecular Biology;2024-02-14

3. Unifying Duplication Episode Clustering andGene-Species Mapping Inference;2023-11-17

4. Phylogenetic reconciliation;PLOS Computational Biology;2022-11-03

5. Reconciliation with Segmental Duplication, Transfer, Loss and Gain;Comparative Genomics;2022

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