The GATK joint genotyping workflow is appropriate for calling variants in RNA-seq experiments
Author:
Funder
Agriculture and Agri-Food Canada
Publisher
Springer Science and Business Media LLC
Subject
Animal Science and Zoology,Biochemistry,Food Science,Biotechnology
Link
http://link.springer.com/content/pdf/10.1186/s40104-019-0359-0.pdf
Reference25 articles.
1. Majewski J, Pastinen T. The study of eQTL variations by RNA-seq: from SNPs to phenotypes. Trends Genet. 2011;27:72–9.
2. Pareek CS, Smoczynski R, Kadarmideen HN, Dziuba P, Blaszczyk P, Sikora M, et al. Single nucleotide polymorphism discovery in bovine pituitary gland using RNA-Seq technology. PLoS One. 2016;11:e0161370.
3. Chitwood JL, Rincon G, Kaiser GG, Medrano JF, Ross PJ. RNA-seq analysis of single bovine blastocysts. BMC Genomics. 2013;14:350.
4. Martinez-Montes AM, Fernandez A, Perez-Montarelo D, Alves E, Benitez RM, Nunez Y, et al. Using RNA-Seq SNP data to reveal potential causal mutations related to pig production traits and RNA editing. Anim Genet. 2017;48:151–65.
5. Suarez-Vega A, Gutierrez-Gil B, Klopp C, Tosser-Klopp G, Arranz JJ. Variant discovery in the sheep milk transcriptome using RNA sequencing. BMC Genomics. 2017;18:170.
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