In silico simulations of occurrence of transcription factor binding sites in bacterial genomes
Author:
Funder
Directorate for Biological Sciences
Publisher
Springer Science and Business Media LLC
Subject
Ecology, Evolution, Behavior and Systematics
Link
http://link.springer.com/content/pdf/10.1186/s12862-019-1381-8.pdf
Reference37 articles.
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2. Bono AC, Hartman CE, Solaimanpour S, Tong H, Porwollik S, McClelland M, Frye JG, Mrázek J, Karls AC. Novel DNA binding and regulatory activities for sigma54 (RpoN) in Salmonella enterica serovar typhimurium 14028s. J Bacteriol. 2017;199(12):e00816–6.
3. Bonocora RP, Smith C, Lapierre P, Wade JT. Genome-scale mapping of Escherichia coli sigma54 reveals widespread. conserved intragenic binding PLoS Genet. 2015;11(10):e1005552.
4. Samuels DJ, Frye JG, Porwollik S, McClelland M, Mrázek J, Hoover TR, Karls AC. Use of a promiscuous, constitutively-active bacterial enhancer-binding protein to define the σ54 (RpoN) regulon of Salmonella typhimurium LT2. BMC Genomics. 2013;14(1):602.
5. Shearwin KE, Callen BP, Egan JB. Transcriptional interference--a crash course. Trends Genet. 2005;21(6):339–45.
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