Transposon insertion profiling by sequencing (TIPseq) for mapping LINE-1 insertions in the human genome-Reference-Cited by-同舟云学术

Transposon insertion profiling by sequencing (TIPseq) for mapping LINE-1 insertions in the human genome

Published:2019-03-08 Issue:1 Volume:10 Page:
ISSN:1759-8753
Container-title:Mobile DNA
language:en
Short-container-title:Mobile DNA

Author:

Steranka Jared P.,Tang Zuojian,Grivainis Mark,Huang Cheng Ran Lisa,Payer Lindsay M.,Rego Fernanda O. R.,Miller Thiago Luiz Araujo,Galante Pedro A. F.,Ramaswami Sitharam,Heguy Adriana,Fenyö David,Boeke Jef D.,Burns Kathleen H.

Funder

National Cancer Institute

National Institute of General Medical Sciences

Sol Goldman Pancreatic Cancer Research Center

Maryland Cigarette Restitution Fund

Publisher

Springer Science and Business Media LLC

Subject

Molecular Biology

Link

http://link.springer.com/content/pdf/10.1186/s13100-019-0148-5.pdf

Reference45 articles.

1. Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, Baldwin J, Devon K, Dewar K, Doyle M, FitzHugh W, et al. Initial sequencing and analysis of the human genome. Nature. 2001;409(6822):860–921.

2. Skowronski J, Fanning TG, Singer MF. Unit-length line-1 transcripts in human teratocarcinoma cells. Mol Cell Biol. 1988;8(4):1385–97.

3. Sheen FM, Sherry ST, Risch GM, Robichaux M, Nasidze I, Stoneking M, Batzer MA, Swergold GD. Reading between the LINEs: human genomic variation induced by LINE-1 retrotransposition. Genome Res. 2000;10(10):1496–508.

4. Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HH Jr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003;100(9):5280–5.

5. Beck CR, Collier P, Macfarlane C, Malig M, Kidd JM, Eichler EE, Badge RM, Moran JV. LINE-1 retrotransposition activity in human genomes. Cell. 2010;141(7):1159–70.

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