Considerations and complications of mapping small RNA high-throughput data to transposable elements-Reference-Cited by-同舟云学术

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Considerations and complications of mapping small RNA high-throughput data to transposable elements

Published:2017-02-15 Issue:1 Volume:8 Page:
ISSN:1759-8753
Container-title:Mobile DNA
language:en
Short-container-title:Mobile DNA

Author:

Bousios Alexandros^ORCID,Gaut Brandon S.,Darzentas Nikos

Funder

Seventh Framework Programme

National Science Foundation

Albert and Elaine Borchard Foundation

Ministry of Health of the Czech Republic

CEITEC 2020

Publisher

Springer Science and Business Media LLC

Subject

Molecular Biology

Link

http://link.springer.com/content/pdf/10.1186/s13100-017-0086-z.pdf

Reference57 articles.

1. Castel SE, Martienssen RA. RNA interference in the nucleus: roles for small RNAs in transcription, epigenetics and beyond. Nat Rev Genet. 2013;14(2):100–12.

2. Axtell MJ. Classification and comparison of small RNAs from plants. Annu Rev Plant Biol. 2013;64:137–59.

3. Borges F, Martienssen RA. The expanding world of small RNAs in plants. Nat Rev Mol Cell Biol. 2015;16(12):727–41.

4. Matzke MA, Mosher RA. RNA-directed DNA methylation: an epigenetic pathway of increasing complexity. Nat Rev Genet. 2014;15(6):394–408.

5. An JY, Lai J, Lehman ML, Nelson CC. miRDeep*: an integrated application tool for miRNA identification from RNA sequencing data. Nucleic Acids Res. 2013;41(2):727–37.

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1. Phase Separation of Chromatin Structure-related Biomolecules: A Driving Force for Epigenetic Regulations;Current Protein & Peptide Science;2024-09

2. miRNA-like secondary structures in maize (Zea mays) genes and transposable elements correlate with small RNAs, methylation, and expression;Genome Research;2023-11

3. Diverse patterns of secondary structure across genes and transposable elements are associated with siRNA production and epigenetic fate;2022-10-21

4. Patterns of selection in the evolution of a transposable element;G3 Genes|Genomes|Genetics;2022-03-09

5. Phase separation of chromatin and small RNA pathways in plants;The Plant Journal;2021-10-09

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