A phasing and imputation method for pedigreed populations that results in a single-stage genomic evaluation-Reference-Cited by-同舟云学术

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A phasing and imputation method for pedigreed populations that results in a single-stage genomic evaluation

Published:2012-06-19 Issue:1 Volume:44 Page:
ISSN:1297-9686
Container-title:Genetics Selection Evolution
language:en
Short-container-title:Genet Sel Evol

Author:

Hickey John M,Kinghorn Brian P,Tier Bruce,van der Werf Julius HJ,Cleveland Matthew A

Publisher

Springer Science and Business Media LLC

Subject

Genetics,Animal Science and Zoology,General Medicine,Ecology, Evolution, Behavior and Systematics

Link

http://link.springer.com/content/pdf/10.1186/1297-9686-44-9.pdf

Reference33 articles.

1. Scheet P, Stephens M: A fast and flexible statistical model for large-scale population genotype data: applications to inferring missing genotypes and haplotypic phase. Am J Hum Genet. 2006, 78: 629-644. 10.1086/502802.

2. Li Y, Abecasis G: Mach 1.0: Rapid Haplotype Reconstruction and Missing Genotype Inference. Am J Hum Genet. 2006, S79: 2290-

3. Browning SR, Browning BL: Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering. Am J Hum Genet. 2007, 81: 1084-1097. 10.1086/521987.

4. Howie BN, Donnelly P, Marchini J: A flexible and accurate genotype imputation method for the next generation of genome-wide association studies. PLoS Genet. 2009, 5 (6): e1000529-10.1371/journal.pgen.1000529.

5. Druet T, Georges M: A Hidden Markov model combining linkage and linkage disequilibrium information for haplotype reconstruction and quantitative trait locus fine mapping. Genetics. 2010, 184: 789-798. 10.1534/genetics.109.108431.

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