RNA:DNA hybrids in the human genome have distinctive nucleotide characteristics, chromatin composition, and transcriptional relationships-Reference-Cited by-同舟云学术

RNA:DNA hybrids in the human genome have distinctive nucleotide characteristics, chromatin composition, and transcriptional relationships

Published:2015-11-16 Issue:1 Volume:8 Page:
ISSN:1756-8935
Container-title:Epigenetics & Chromatin
language:en
Short-container-title:Epigenetics & Chromatin

Author:

Nadel Julie,Athanasiadou Rodoniki,Lemetre Christophe,Wijetunga N. Ari,Ó Broin Pilib,Sato Hanae,Zhang Zhengdong,Jeddeloh Jeffrey,Montagna Cristina,Golden Aaron,Seoighe Cathal,Greally John M.^ORCID

Funder

National Institute of General Medical Sciences

Publisher

Springer Science and Business Media LLC

Subject

Genetics,Molecular Biology

Link

http://link.springer.com/content/pdf/10.1186/s13072-015-0040-6.pdf

Reference88 articles.

1. Wang J, Zhuang J, Iyer S, Lin X, Whitfield TW, Greven MC, Pierce BG, Dong X, Kundaje A, Cheng Y, et al. Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors. Genome Res. 2012;22:1798–812.

2. Neph S, Vierstra J, Stergachis AB, Reynolds AP, Haugen E, Vernot B, Thurman RE, John S, Sandstrom R, Johnson AK, et al. An expansive human regulatory lexicon encoded in transcription factor footprints. Nature. 2012;489:83–90.

3. Natarajan A, Yardimci GG, Sheffield NC, Crawford GE, Ohler U. Predicting cell-type-specific gene expression from regions of open chromatin. Genome Res. 2012;22:1711–22.

4. Yip KY, Cheng C, Bhardwaj N, Brown JB, Leng J, Kundaje A, Rozowsky J, Birney E, Bickel P, Snyder M, Gerstein M. Classification of human genomic regions based on experimentally determined binding sites of more than 100 transcription-related factors. Genome Biol. 2012;13:R48.

5. Hu S, Wan J, Su Y, Song Q, Zeng Y, Nguyen HN, Shin J, Cox E, Rho HS, Woodard C, et al. DNA methylation presents distinct binding sites for human transcription factors. eLife. 2013;2:e00726.

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