Fractal MapReduce decomposition of sequence alignment

Author:

Almeida Jonas S,Grüneberg Alexander,Maass Wolfgang,Vinga Susana

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computational Theory and Mathematics,Molecular Biology,Structural Biology

Reference32 articles.

1. Wetterstrand KA: DNA Sequencing Costs: Data from the NHGRI Large-Scale Genome Sequencing Program. 2011, [cited 2011 September], http://www.genome.gov/sequencingcosts

2. Needleman SB, Wunsch CD: A general method applicable to the search for similarities in the amino acid sequence of two proteins. J Mol Biol. 1970, 48 (3): 443-53.

3. Smith TF, Waterman MS: Identification of common molecular subsequences. J Mol Biol. 1981, 147 (1): 195-7.

4. Ruffalo M, Laframboise T, Koyuturk M: Comparative analysis of algorithms for next-generation sequencing read alignment. Bioinformatics. 2011,

5. Vinga S, Almeida J: Alignment-free sequence comparison-a review. Bioinformatics. 2003, 19 (4): 513-23.

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