Performance evaluation of commercial short-oligonucleotide microarrays and the impact of noise in making cross-platform correlations-Reference-Cited by-同舟云学术

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Performance evaluation of commercial short-oligonucleotide microarrays and the impact of noise in making cross-platform correlations

Published:2004-09-02 Issue:1 Volume:5 Page:
ISSN:1471-2164
Container-title:BMC Genomics
language:en
Short-container-title:BMC Genomics

Author:

Shippy Richard,Sendera Timothy J,Lockner Randall,Palaniappan Chockalingam,Kaysser-Kranich Tamma,Watts George,Alsobrook John

Publisher

Springer Science and Business Media LLC

Subject

Genetics,Biotechnology

Link

http://link.springer.com/content/pdf/10.1186/1471-2164-5-61.pdf

Reference36 articles.

1. Sendera TJ, Dorris D, Ramakrishnan R, Nguyen A, Trakas D, Mazumder A: Expression Profiling with Oligonucleotide Arrays: Technologies and Applications for Neurobiology. Neurochem Res. 2002, 10: 1005-1026. 10.1023/A:1020948603490.

2. Brazma A, Hingamp P, Quackenbush J, Sherlcok G, Spellman P, Stoeckert C, Aach J, Ansorge W, Ball CA, Causton HC, Gaasterland T, Glenisson P, Holstege FCP, Kim IF, Markowitz V, Matese JC, Parkinson H, Robinson A, Sarkans U, Schulze-Kremer S, Stewart J, Taylor R, Vilo J, Vingron M: Minimum information about a microarray experiment (MIAME)-toward standards for microarray data. Nature Genetics. 2001, 29: 365-371. 10.1038/ng1201-365.

3. Edgar R, Domrachev M, Lash AE: Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res. 2002, 30: 207-210. 10.1093/nar/30.1.207.

4. Kuo WP, Jenssen TK, Butte AJ, Ohno-Machado L, Kohane IS: Analysis of matched mRNA measurements from two different microarray technologies. Bioinformatics. 2002, 18: 405-412. 10.1093/bioinformatics/18.3.405.

5. Li J, Pankratz M, Johnson JA: Differential gene expression patterns revealed by oligonucleotide versus long cDNA arrays. Toxicol Sci. 2002, 69: 383-390. 10.1093/toxsci/69.2.383.

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