Improving reliability and absolute quantification of human brain microarray data by filtering and scaling probes using RNA-Seq-Reference-Cited by-同舟云学术

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Improving reliability and absolute quantification of human brain microarray data by filtering and scaling probes using RNA-Seq

Published:2014-02-24 Issue:1 Volume:15 Page:
ISSN:1471-2164
Container-title:BMC Genomics
language:en
Short-container-title:BMC Genomics

Author:

Miller Jeremy A,Menon Vilas,Goldy Jeff,Kaykas Ajamete,Lee Chang-Kyu,Smith Kimberly A,Shen Elaine H,Phillips John W,Lein Ed S,Hawrylycz Mike J

Publisher

Springer Science and Business Media LLC

Subject

Genetics,Biotechnology

Link

https://link.springer.com/content/pdf/10.1186/1471-2164-15-154.pdf

Reference43 articles.

1. Bradford JR, Hey Y, Yates T, Li Y, Pepper SD, Miller CJ: A comparison of massively parallel nucleotide sequencing with oligonucleotide microarrays for global transcription profiling. BMC Genomics. 2010, 11: 282-10.1186/1471-2164-11-282.

2. Chen H, Liu Z, Gong S, Wu X, Taylor WL, Williams RW, Matta SG, Sharp BM: Genome-wide gene expression profiling of nucleus accumbens neurons projecting to ventral pallidum using both microarray and transcriptome sequencing. Front Neurosci. 2011, 5: 98-

3. Marioni JC, Mason CE, Mane SM, Stephens M, Gilad Y: RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays. Genome Res. 2008, 18: 1509-1517. 10.1101/gr.079558.108.

4. Raghavachari N, Barb J, Yang Y, Liu P, Woodhouse K, Levy D, O'Donnell CJ, Munson PJ, Kato GJ: A systematic comparison and evaluation of high density exon arrays and RNA-seq technology used to unravel the peripheral blood transcriptome of sickle cell disease. BMC Med Genom. 2012, 5: 28-10.1186/1755-8794-5-28.

5. Sirbu A, Kerr G, Crane M, Ruskin HJ: RNA-Seq vs dual- and single-channel microarray data: sensitivity analysis for differential expression and clustering. PLoS ONE. 2012, 7: e50986-10.1371/journal.pone.0050986.

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