RECLU: a pipeline to discover reproducible transcriptional start sites and their alternative regulation using capped analysis of gene expression (CAGE)-Reference-Cited by-同舟云学术

RECLU: a pipeline to discover reproducible transcriptional start sites and their alternative regulation using capped analysis of gene expression (CAGE)

Published:2014-04-25 Issue:1 Volume:15 Page:
ISSN:1471-2164
Container-title:BMC Genomics
language:en
Short-container-title:BMC Genomics

Author:

Ohmiya Hiroko,Vitezic Morana,Frith Martin C,Itoh Masayoshi,Carninci Piero,Forrest Alistair RR,Hayashizaki Yoshihide,Lassmann Timo,

Publisher

Springer Science and Business Media LLC

Subject

Genetics,Biotechnology

Link

https://link.springer.com/content/pdf/10.1186/1471-2164-15-269.pdf

Reference36 articles.

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3. Kodzius R, Kojima M, Nishiyori H, Nakamura M, Fukuda S, Tagami M, Sasaki D, Imamura K, Kai C, Harbers M, Hayashizaki Y, Carninci P: Cage: cap analysis of gene expression. Nat Methods. 2006, 3: 211-222. 10.1038/nmeth0306-211.

4. Consortium TF, Center ROS: The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line. Nat Genet. 2009, 41: 553-562. 10.1038/ng.375.

5. Carninci P, Sandelin A, Lenhard B, Katayama S, Shimokawa K, Ponjavic J, Semple CA, Taylor MS, Engstrom PG, Frith MC, Forrest ARR, Alkema WB, Tan SL, Plessy C, Kodzius R, Ravasi T, Kasukawa T, Fukuda S, Kanamori-Katayama M, Kitazume Y, Kawaji H, Kai C, Nakamura M, Konno H, Nakano K, Mottagui-Tabar S, Arner P, Chesi A, Gustincich S, Persichetti F, et al: Genome-wide analysis of mammalian promoter architecture and evolution. Nat Genet. 2006, 38: 626-635. 10.1038/ng1789.

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