Coevolutionary analyses require phylogenetically deep alignments and better null models to accurately detect inter-protein contacts within and between species-Reference-Cited by-同舟云学术

Coevolutionary analyses require phylogenetically deep alignments and better null models to accurately detect inter-protein contacts within and between species

Published:2015-08-25 Issue:1 Volume:16 Page:
ISSN:1471-2105
Container-title:BMC Bioinformatics
language:en
Short-container-title:BMC Bioinformatics

Author:

Avila-Herrera Aram,Pollard Katherine S.

Funder

National Institutes of Health

San Simeon Fund

UCSF Graduate Research Mentorship Fellowship

Gladstone Institutes

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Structural Biology

Link

http://link.springer.com/content/pdf/10.1186/s12859-015-0677-y.pdf

Reference72 articles.

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4. de Juan D, Pazos F, Valencia A. Emerging methods in protein co-evolution. Nat Rev Genet. 2013; 14(4):249–61. doi: 10.1038/nrg3414 .

5. Buslje CM, Santos J, Delfino JM, Nielsen M. Correction for phylogeny, small number of observations and data redundancy improves the identification of coevolving amino acid pairs using mutual information. Bioinformatics. 2009; 25(9):1125–31. doi: 10.1093/bioinformatics/btp135 .

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