Amplitude spectrum distance: measuring the global shape divergence of protein fragments
Author:
Publisher
Springer Science and Business Media LLC
Subject
Applied Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Structural Biology
Link
http://link.springer.com/article/10.1186/s12859-015-0693-y/fulltext.html
Reference33 articles.
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2. Shindyalov IN, Bourne PE. Protein structure alignment by incremental combinatorial extension (ce) of the optimal path.Protein Eng. 1998; 11(9):739–47.
3. Zhi D, Shatsky M, Brenner SE. Alignment-free local structural search by writhe decomposition. Bioinformatics. 2010; 26(9):1176–84.
4. Xuefeng C, Cheng LS, Lin H, Ming L. Fingerprinting protein structures effectively and efficiently. Bioinformatics. 2013. doi: 10.1093/bioinformatics/btt659 .
5. Simons KT, Kooperberg C, Huang E, Baker D. Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and bayesian scoring functions. J Mol Biol. 1997; 268(1):209–25.
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