Survival time prediction by integrating cox proportional hazards network and distribution function network

Author:

Baek Eu-Tteum,Yang Hyung JeongORCID,Kim Soo Hyung,Lee Guee Sang,Oh In-Jae,Kang Sae-Ryung,Min Jung-Joon

Abstract

Abstract Background The Cox proportional hazards model is commonly used to predict hazard ratio, which is the risk or probability of occurrence of an event of interest. However, the Cox proportional hazard model cannot directly generate an individual survival time. To do this, the survival analysis in the Cox model converts the hazard ratio to survival times through distributions such as the exponential, Weibull, Gompertz or log-normal distributions. In other words, to generate the survival time, the Cox model has to select a specific distribution over time. Results This study presents a method to predict the survival time by integrating hazard network and a distribution function network. The Cox proportional hazards network is adapted in DeepSurv for the prediction of the hazard ratio and a distribution function network applied to generate the survival time. To evaluate the performance of the proposed method, a new evaluation metric that calculates the intersection over union between the predicted curve and ground truth was proposed. To further understand significant prognostic factors, we use the 1D gradient-weighted class activation mapping method to highlight the network activations as a heat map visualization over an input data. The performance of the proposed method was experimentally verified and the results compared to other existing methods. Conclusions Our results confirmed that the combination of the two networks, Cox proportional hazards network and distribution function network, can effectively generate accurate survival time.

Funder

Bio & Medical Technology Development Program of the National Research Foundation (NRF) & funded by the Korean government

a grant(HCRI 19136) from Chonnam National University Hwasun Hospital Institute for Biomedical Science

National Research Foundation of Korea(NRF) grant funded by the Korea governmen

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Structural Biology

Reference36 articles.

1. Mobadersany P, Yousefi S, Amgad M, Gutman DA, Barnholtz-Sloan JS, Vega JB, D., and Cooper, L. . Predicting cancer outcomes from histology and genomics using convolutional networks. Natl Acad Sci. 2018;115(13):E2970–9.

2. Chancharat N, Tian G, Davy P, McCrae M, Lodh S. Multiple states of financially distressed companies: Tests using a competing-risks model”. Australas Account Bus Finance J. 2010;4(4):27–44.

3. Leung K, Elashoff R, Afifi A. Censoring issues in survival analysis. Annu Rev Public Health. 1997;18(1):83–104.

4. De Gruttola V, Lagakos SW. Analysis of doubly censored survival data with application to AIDS. Biometrics. 1989;45:1–11.

5. Cox D. Regression models and life tables (with discussion). J Roy Stat Soc B. 1972;34(2):187–202.

同舟云学术

1.学者识别学者识别

2.学术分析学术分析

3.人才评估人才评估

"同舟云学术"是以全球学者为主线,采集、加工和组织学术论文而形成的新型学术文献查询和分析系统,可以对全球学者进行文献检索和人才价值评估。用户可以通过关注某些学科领域的顶尖人物而持续追踪该领域的学科进展和研究前沿。经过近期的数据扩容,当前同舟云学术共收录了国内外主流学术期刊6万余种,收集的期刊论文及会议论文总量共计约1.5亿篇,并以每天添加12000余篇中外论文的速度递增。我们也可以为用户提供个性化、定制化的学者数据。欢迎来电咨询!咨询电话:010-8811{复制后删除}0370

www.globalauthorid.com

TOP

Copyright © 2019-2024 北京同舟云网络信息技术有限公司
京公网安备11010802033243号  京ICP备18003416号-3