RhoTermPredict: an algorithm for predicting Rho-dependent transcription terminators based on Escherichia coli, Bacillus subtilis and Salmonella enterica databases

Author:

Di Salvo Marco,Puccio Simone,Peano Clelia,Lacour Stephan,Alifano PietroORCID

Funder

Ministero dell’Istruzione, dell’Università e della Ricerca

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Structural Biology

Reference44 articles.

1. Ray-Soni A, Bellecourt MJ, Landick R. Mechanisms of bacterial transcription termination: all good things must end. Annu Rev Biochem. 2016;85:319–47.

2. d’Aubenton Carafa Y, Brody E, Thermes C. Prediction of rho-independent Escherichia coli transcription terminators. A statistical analysis of their RNA stem-loop structures J Mol Biol. 1990;216:835–58.

3. Ciampi MS. Rho-dependent terminators and transcription termination. Microbiology. 2006;152:2515–28.

4. Banerjee S, Chalissery J, Bandey I, Sen R. Rho dependent transcription termination: more questions than answers. J Microbiol. 2006;44:11–22.

5. Mitra P, Ghosh G, Hafeezunnisa M, Sen R. Rho protein: roles and mechanisms. Annu Rev Microbiol. 2017;71:687–709.

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