ARKS: chromosome-scale scaffolding of human genome drafts with linked read kmers-Reference-Cited by-同舟云学术

登录注册会员服务联系我们

ARKS: chromosome-scale scaffolding of human genome drafts with linked read kmers

Published:2018-06-20 Issue:1 Volume:19 Page:
ISSN:1471-2105
Container-title:BMC Bioinformatics
language:en
Short-container-title:BMC Bioinformatics

Author:

Coombe Lauren,Zhang Jessica,Vandervalk Benjamin P.,Chu Justin,Jackman Shaun D.,Birol Inanc,Warren René L.

Funder

National Human Genome Research Institute

Genome Canada

Genome British Columbia

Genome Quebec

Genome Alberta

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Structural Biology

Link

http://link.springer.com/content/pdf/10.1186/s12859-018-2243-x.pdf

Reference25 articles.

1. Zheng GX, Lau BT, Schnall-Levin M, Jarosz M, Bell JM, Hindson CM, et al. Haplotyping germline and cancer genomes with high-throughput linked-read sequencing. Nat Biotechnol. 2016;34(3):303–11.

2. Weisenfeld NI, Kumar V, Shah P, Church DM, Jaffe DB. Direct determination of diploid genome sequences. Genome Res. 2017;27(5):757–67.

3. Yeo S, Coombe L, Chu J, Warren RL, Birol I. ARCS: scaffolding genome drafts with linked reads. Bioinformatics. 2018;34(5):725–31.

4. Adey A, Kitzman JO, Burton JN, Daza R, Kumar A, Christiansen L, et al. In vitro, long-range sequence information for de novo genome assembly via transposase contiguity. Genome Res. 2014;24(12):2041–9.

5. Kuleshov V, Snyder MP, Batzoglou S. Genome assembly from synthetic long read clouds. Bioinformatics. 2016;32(12):i216–24.

Cited by 85 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. High‐quality genome assemblies for nine non‐model North American insect species representing six orders (Insecta: Coleoptera, Diptera, Hemiptera, Hymenoptera, Lepidoptera, Neuroptera);Molecular Ecology Resources;2024-08-18

2. The genomics of mimicry: Gene expression throughout development provides insights into convergent and divergent phenotypes in a Müllerian mimicry system;Molecular Ecology;2024-06-24

3. Haplotype-aware multiomics unveils the regulatory basis of haplodiplontic life-cycle differentiation in a cosmopolitan marine alga;2024-05-31

4. A chromosome-level genome assembly of the Hispid cotton rat (Sigmodon hispidus), a model for human pathogenic virus infections;2024-03-26

5. Genome assembly and annotation of the mermithid nematode Mermis nigrescens;G3: Genes, Genomes, Genetics;2024-02-01

同舟云学术

1.学者识别学者识别

2.学术分析学术分析

3.人才评估人才评估

"同舟云学术"是以全球学者为主线，采集、加工和组织学术论文而形成的新型学术文献查询和分析系统，可以对全球学者进行文献检索和人才价值评估。用户可以通过关注某些学科领域的顶尖人物而持续追踪该领域的学科进展和研究前沿。经过近期的数据扩容，当前同舟云学术共收录了国内外主流学术期刊6万余种，收集的期刊论文及会议论文总量共计约1.5亿篇，并以每天添加12000余篇中外论文的速度递增。我们也可以为用户提供个性化、定制化的学者数据。欢迎来电咨询！咨询电话：010-8811{复制后删除}0370

www.globalauthorid.com

TOP

Copyright © 2019-2024 北京同舟云网络信息技术有限公司
京公网安备11010802033243号京ICP备18003416号-3