DomSign: a top-down annotation pipeline to enlarge enzyme space in the protein universe-Reference-Cited by-同舟云学术

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DomSign: a top-down annotation pipeline to enlarge enzyme space in the protein universe

Published:2015-03-21 Issue:1 Volume:16 Page:
ISSN:1471-2105
Container-title:BMC Bioinformatics
language:en
Short-container-title:BMC Bioinformatics

Author:

Wang Tianmin,Mori Hiroshi,Zhang Chong,Kurokawa Ken,Xing Xin-Hui,Yamada Takuji

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Structural Biology

Link

http://link.springer.com/article/10.1186/s12859-015-0499-y/fulltext.html

Reference54 articles.

1. Friedberg I. Automated protein function prediction–the genomic challenge. Brief Bioinform. 2006;7:225–42.

2. Pitkänen E, Rousu J, Ukkonen E. Computational methods for metabolic reconstruction. Curr Opin Biotechnol. 2010;21:70–7.

3. Roy A, Yang J, Zhang Y. COFACTOR: an accurate comparative algorithm for structure-based protein function annotation. Nucleic Acids Res. 2012;40(Web Server issue):W471–7.

4. Lee DA, Rentzsch R, Orengo C. GeMMA: functional subfamily classification within superfamilies of predicted protein structural domains. Nucleic Acids Res. 2010;38:720–37.

5. Gaudet P, Livstone MS, Lewis SE, Thomas PD. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011;12:449–62.

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