SpliceV: analysis and publication quality printing of linear and circular RNA splicing, expression and regulation-Reference-Cited by-同舟云学术

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SpliceV: analysis and publication quality printing of linear and circular RNA splicing, expression and regulation

Published:2019-05-08 Issue:1 Volume:20 Page:
ISSN:1471-2105
Container-title:BMC Bioinformatics
language:en
Short-container-title:BMC Bioinformatics

Author:

Ungerleider Nathan,Flemington Erik

Funder

National Institutes of Health

U.S. Department of Defense

Lymphoma Research Foundation

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Structural Biology

Link

http://link.springer.com/content/pdf/10.1186/s12859-019-2865-7.pdf

Reference43 articles.

1. Amara SG, Jonas V, Rosenfeld MG, Ong ES, Evans RM. Alternative RNA processing in calcitonin gene expression generates MRNAs encoding different polypeptide products. Nature. 1982;298(5871):240–4. https://doi.org/10.1038/298240a0 .

2. Bass AJ, Thorsson V, Shmulevich I, Reynolds SM, Miller M, Bernard B, Hinoue T, et al. Comprehensive molecular characterization of gastric adenocarcinoma. Nature. 2014;513(7517):202–9. https://doi.org/10.1038/nature13480 .

3. Bentley DL. Coupling MRNA processing with transcription in time and space. Nat Rev Genet. 2014;15(3):163–75 https://doi.org/10.1038/nrg3662 .

4. Boise LH, González-García M, Postema CE, Ding L, Lindsten T, Turka LA, Mao X, Nuñez G, Thompson CB. Bcl-x, a Bcl-2-related gene that functions as a dominant regulator of apoptotic cell death. Cell. 1993;74(4):597–608. https://doi.org/10.1016/0092-8674(93)90508-N .

5. Cartegni L, Wang J, Zhu Z, Zhang MQ, Krainer AR. ESEfinder: a web resource to identify Exonic splicing enhancers. Nucleic Acids Res. 2003;31(13):3568–71. https://doi.org/10.1093/nar/gkg616 .

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1. SpliceTools, a suite of downstream RNA splicing analysis tools to investigate mechanisms and impact of alternative splicing;Nucleic Acids Research;2023-03-02

2. Reversal of splicing infidelity is a pre-activation step in B cell differentiation;Frontiers in Immunology;2022-12-19

3. Identification and characterization of virus-encoded circular RNAs in host cells;Microbial Genomics;2022-06-22

4. Transcriptome analysis provides critical answers to the “variants of uncertain significance” conundrum;Human Mutation;2022-05-18

5. A survey of circular RNAs in complex diseases: databases, tools and computational methods;Briefings in Bioinformatics;2021-10-21

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