Tigmint: correcting assembly errors using linked reads from large molecules
Author:
Publisher
Springer Science and Business Media LLC
Subject
Applied Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Structural Biology
Link
http://link.springer.com/content/pdf/10.1186/s12859-018-2425-6.pdf
Reference31 articles.
1. Zheng GXY, Lau BT, Schnall-Levin M, Jarosz M, Bell JM, Hindson CM, et al.Haplotyping germline and cancer genomes with high-throughput linked-read sequencing. Nat Biotechnol. 2016; 34:303–11. https://doi.org/doi:10.1038/nbt.3432 .
2. Weisenfeld NI, Kumar V, Shah P, Church DM, Jaffe DB. Direct determination of diploid genome sequences. Genome Res. 2017; 27:757–67. https://doi.org/doi:10.1101/gr.214874.116 .
3. Mostovoy Y, Levy-Sakin M, Lam J, Lam ET, Hastie AR, Marks P, et al.A hybrid approach for de novo human genome sequence assembly and phasing. Nat Methods. 2016; 13:587–90. https://doi.org/doi:10.1038/nmeth.3865 .
4. Yeo S, Coombe L, Warren RL, Chu J, Birol I. ARCS: Scaffolding genome drafts with linked reads. Bioinformatics. 2017; 34:725–31. https://doi.org/doi:10.1093/bioinformatics/btx675 .
5. 10x Genomics, Inc. Overview of Genome Software. https://support.10xgenomics.com/genome-exome/software/overview/welcome . Accessed 1 Jun 2018.
Cited by 100 articles. 订阅此论文施引文献 订阅此论文施引文献,注册后可以免费订阅5篇论文的施引文献,订阅后可以查看论文全部施引文献
1. Loss of genetic variation and ancestral sex determination system in North American northern pike characterized by whole-genome resequencing;G3: Genes, Genomes, Genetics;2024-08-08
2. COATi: Statistical Pairwise Alignment of Protein-Coding Sequences;Molecular Biology and Evolution;2024-06-13
3. Signatures of transposon-mediated genome inflation, host specialization, and photoentrainment in Entomophthora muscae and allied entomophthoralean fungi;eLife;2024-05-20
4. Signatures of transposon-mediated genome inflation, host specialization, and photoentrainment in Entomophthora muscae and allied entomophthoralean fungi;2024-04-26
5. A combination of conserved and diverged responses underlies Theobroma cacao’s defense response to Phytophthora palmivora;BMC Biology;2024-02-16
1.学者识别学者识别
2.学术分析学术分析
3.人才评估人才评估
"同舟云学术"是以全球学者为主线,采集、加工和组织学术论文而形成的新型学术文献查询和分析系统,可以对全球学者进行文献检索和人才价值评估。用户可以通过关注某些学科领域的顶尖人物而持续追踪该领域的学科进展和研究前沿。经过近期的数据扩容,当前同舟云学术共收录了国内外主流学术期刊6万余种,收集的期刊论文及会议论文总量共计约1.5亿篇,并以每天添加12000余篇中外论文的速度递增。我们也可以为用户提供个性化、定制化的学者数据。欢迎来电咨询!咨询电话:010-8811{复制后删除}0370
www.globalauthorid.com
TOP
Copyright © 2019-2024 北京同舟云网络信息技术有限公司 京公网安备11010802033243号 京ICP备18003416号-3