Identifying protein complexes based on node embeddings obtained from protein-protein interaction networks-Reference-Cited by-同舟云学术

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Identifying protein complexes based on node embeddings obtained from protein-protein interaction networks

Published:2018-09-21 Issue:1 Volume:19 Page:
ISSN:1471-2105
Container-title:BMC Bioinformatics
language:en
Short-container-title:BMC Bioinformatics

Author:

Liu Xiaoxia,Yang Zhihao,Sang Shengtian,Zhou Ziwei,Wang Lei,Zhang Yin,Lin Hongfei,Wang Jian,Xu Bo

Funder

National Natural Science Foundation of China

National Key Research and Development Program of China

Trans-Century Training Program Foundation for the Talents by the Ministry of Education of China

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Structural Biology

Link

http://link.springer.com/content/pdf/10.1186/s12859-018-2364-2.pdf

Reference38 articles.

1. Chen B, Fan W, Liu J, Wu F-X. Identifying protein complexes and functional modules—from static ppi networks to dynamic ppi networks. Brief Bioinform. 2013; 15(2):177–94.

2. Li X, Wang J, Zhao B, Wu F-X, Pan Y. Identification of protein complexes from multi-relationship protein interaction networks. Hum genomi. 2016; 10(2):17.

3. Von Mering C, Krause R, Snel B, Cornell M, Oliver SG, Fields S, Bork P. Comparative assessment of large-scale data sets of protein–protein interactions. Nature. 2002; 417(6887):399–403.

4. Sprinzak E, Sattath S, Margalit H. How reliable are experimental protein–protein interaction data?. J Mol Biol. 2003; 327(5):919–23.

5. Wodak SJ, Vlasblom J, Turinsky AL, Pu S. Protein–protein interaction networks: the puzzling riches. Curr Opin Struct Biol. 2013; 23(6):941–53.

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