RevEcoR: an R package for the reverse ecology analysis of microbiomes-Reference-Cited by-同舟云学术

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RevEcoR: an R package for the reverse ecology analysis of microbiomes

Published:2016-07-29 Issue:1 Volume:17 Page:
ISSN:1471-2105
Container-title:BMC Bioinformatics
language:en
Short-container-title:BMC Bioinformatics

Author:

Cao Yang,Wang Yuanyuan,Zheng Xiaofei,Li Fei,Bo Xiaochen

Funder

National Natural Science Foundation of China (CN)

National Natural Science Foundation of China

Program of International S&T Cooperation

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Structural Biology

Link

http://link.springer.com/content/pdf/10.1186/s12859-016-1088-4

Reference24 articles.

1. Hugenholtz P, Goebel BM, Pace NR. Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity. J Bacteriol. 1998;180:4765–74.

2. Amann RI, Ludwig W, Schleifer KH. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev. 1995;59:143–69.

3. Levy R, Borenstein E. Reverse Ecology: from systems to environments and back. Adv Exp Med Biol. 2012;751:329–345.

4. Levy R, Borenstein E. Metagenomic systems biology and metabolic modeling of the human microbiome. Gut Microbes. 2014;5:265–270.

5. Borenstein E, Kupiec M, Feldman MW, et al. Large-scale reconstruction and phylogenetic analysis of metabolic environments. Proc Natl Acad Sci. 2008;105:14482–7.

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