SimCAL: a flexible tool to compute biochemical reaction similarity-Reference-Cited by-同舟云学术

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SimCAL: a flexible tool to compute biochemical reaction similarity

Published:2018-07-03 Issue:1 Volume:19 Page:
ISSN:1471-2105
Container-title:BMC Bioinformatics
language:en
Short-container-title:BMC Bioinformatics

Author:

Sivakumar Tadi Venkata,Bhaduri Anirban,Duvvuru Muni Rajasekhara Reddy,Park Jin Hwan,Kim Tae Yong

Funder

Samsung Advanced Institute of Technology

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Structural Biology

Link

http://link.springer.com/content/pdf/10.1186/s12859-018-2248-5.pdf

Reference45 articles.

1. Egelhofer V, Schomburg I, Schomburg D. Automatic assignment of EC numbers. PLoS Comput Biol. 2010;6:e1000661.

2. Hu QN, Zhu H, Li X, Zhang M, Deng Z, Yang X, et al. Assignment of EC numbers to enzymatic reactions with reaction difference fingerprints. PLoS One. 2012;7:e52901.

3. Dönertaş HM, Martínez Cuesta S, Rahman SA, Thornton JM. Characterising complex enzyme reaction data. PLoS One. 2016;11:e0147952.

4. Nath N, Mitchell JB. Is EC class predictable from reaction mechanism? BMC Bioinformatics. 2012;13:60.

5. Pertusi DA, Stine AE, Broadbelt LJ, Tyo KEJ. Efficient searching and annotation of metabolic networks using chemical similarity. Bioinformatics [Internet]. 2015;31:1016–1024. Available from: http://www.ncbi.nlm.nih.gov/pubmed/25417203

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