SSS-test: a novel test for detecting positive selection on RNA secondary structure-Reference-Cited by-同舟云学术

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SSS-test: a novel test for detecting positive selection on RNA secondary structure

Published:2019-03-21 Issue:1 Volume:20 Page:
ISSN:1471-2105
Container-title:BMC Bioinformatics
language:en
Short-container-title:BMC Bioinformatics

Author:

Walter Costa Maria Beatriz,Höner zu Siederdissen Christian^ORCID,Dunjić Marko,Stadler Peter F.,Nowick Katja

Funder

Conselho Nacional de Desenvolvimento Científico e Tecnológico

Deutsche Forschungsgemeinschaft

Volkswagen Foundation

Deutscher Akademischer Austauschdienst

Freie Universität Berlin

Universität Leipzig

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Structural Biology

Link

http://link.springer.com/content/pdf/10.1186/s12859-019-2711-y.pdf

Reference116 articles.

1. Clark MB, Amaral PP, Schlesinger FJ, Dinger ME, Taft RJ, Rinn JL, Ponting CP, Stadler PF, Morris KJ, Morillon A, Rozowsky JS, Gerstein M, Wahlestedt C, Hayashizaki Y, Carninci P, Gingeras TR, Mattick JS. The reality of pervasive transcription. PLoS Biol. 2011; 9:1000625. https://doi.org/10.1371/journal.pbio.1000625 .

2. Derrien T, Johnson R, Bussotti G, Tanzer A, Djebali S, Tilgner H, Guernec G, Martin D, Merkel A, Knowles DG, Lagarde J, Veeravalli L, Ruan X, Ruan Y, Lassmann T, Carninci P, Brown JB, Lipovich L, Gonzalez JM, Thomas M, Davis CA, Shiekhattar R, Gingeras TR, Hubbard TJ, Notredame C, Harrow J, Guigò R. The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression. Genome Res. 2012; 22:1775–89. https://doi.org/10.1101/gr.132159.111 .

3. ENCODE Project Consortium. An integrated encyclopedia of DNA elements in the human genome. Nature. 2012; 489:57–74. https://doi.org/10.1038/nature11247 .

4. FANTOM Consortium and the RIKEN PMI and CLST (DGT). A promoter-level mammalian expression atlas. Nature. 2014; 507:462–70. https://doi.org/10.1038/nature13182 .

5. St. Laurent G, Wahlestedt C, Kapranov P. The landscape of long noncoding RNA classification. Trends Genet. 2015; 31:239–51. https://doi.org/10.1016/j.tig.2015.03.007 .

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