SPINGO: a rapid species-classifier for microbial amplicon sequences-Reference-Cited by-同舟云学术

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SPINGO: a rapid species-classifier for microbial amplicon sequences

Published:2015-10-08 Issue:1 Volume:16 Page:
ISSN:1471-2105
Container-title:BMC Bioinformatics
language:en
Short-container-title:BMC Bioinformatics

Author:

Allard Guy,Ryan Feargal J.,Jeffery Ian B.,Claesson Marcus J.

Funder

Science Foundation Ireland (IE)

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Structural Biology

Link

http://link.springer.com/content/pdf/10.1186/s12859-015-0747-1.pdf

Reference14 articles.

1. Wang Q, Garrity GM, Tiedje JM, Cole JR. Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol. 2007;73(16):5261–7.

2. Collins MD, Lawson PA, Willems A, Cordoba JJ, Fernandez-Garayzabal J, Garcia P, et al. The phylogeny of the genus Clostridium: proposal of five new genera and eleven new species combinations. Int J Syst Bacteriol. 1994;44(4):812–26.

3. Conlan S. Species-level analysis of DNA sequence data from the NIH Human Microbiome Project. PLoS ONE. 2012;7(10):e47075.

4. Fettweis JM, Serrano MG, Sheth NU, Mayer CM, Glascock AL, Brooks JP, et al. Species-level classification of the vaginal microbiome. BMC Genomics. 2012;13 Suppl 8:S17.

5. Nakayama J, Jiang J, Watanabe K, Chen K, Ninxin H, Matsuda K, et al. Up to species-level community analysis of human Gut microbiota by 16S rRNA amplicon pyrosequencing. Bioscience of Microbiota, Food and Health. 2013;32(2):69–76.

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