Evaluating the necessity of PCR duplicate removal from next-generation sequencing data and a comparison of approaches-Reference-Cited by-同舟云学术

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Evaluating the necessity of PCR duplicate removal from next-generation sequencing data and a comparison of approaches

Published:2016-07 Issue:S7 Volume:17 Page:
ISSN:1471-2105
Container-title:BMC Bioinformatics
language:en
Short-container-title:BMC Bioinformatics

Author:

Ebbert Mark T. W., ,Wadsworth Mark E.,Staley Lyndsay A.,Hoyt Kaitlyn L.,Pickett Brandon,Miller Justin,Duce John,Kauwe John S. K.,Ridge Perry G.

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Structural Biology

Link

http://link.springer.com/content/pdf/10.1186/s12859-016-1097-3

Reference23 articles.

1. Vrijenhoek T, Kraaijeveld K, Elferink M, de Ligt J, Kranendonk E, Santen G, Nijman IJ, Butler D, Claes G, Costessi A, et al. Next-generation sequencing-based genome diagnostics across clinical genetics centers: implementation choices and their effects. Eur J Hum Genet. 2015;23(9):1270.

2. Houston DD, Elzinga DB, Maughan PJ, Smith SM, Kauwe JS, Evans RP, Stinger RB, Shiozawa DK. Single nucleotide polymorphism discovery in cutthroat trout subspecies using genome reduction, barcoding, and 454 pyro-sequencing. BMC Genomics. 2012;13:724.

3. Morin RD, Bainbridge M, Fejes A, Hirst M, Krzywinski M, Pugh TJ, McDonald H, Varhol R, Jones SJ, Marra MA. Profiling the HeLa S3 transcriptome using randomly primed cDNA and massively parallel short-read sequencing. Biotechniques. 2008;45:81.

4. McCormack JE, Hird SM, Zellmer AJ, Carstens BC, Brumfield RT. Applications of next-generation sequencing to phylogeography and phylogenetics. Mol Phylogenet Evol. 2013;66:526–38.

5. Berthelot C, Brunet F, Chalopin D, Juanchich A, Bernard M, Noël B, Bento P, Da Silva C, Labadie K, Alberti A, et al. The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates. Nat Commun. 2014;5:3657.

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