Data access for the 1,000 Plants (1KP) project-Reference-Cited by-同舟云学术

Data access for the 1,000 Plants (1KP) project

Published:2014-10-27 Issue:1 Volume:3 Page:
ISSN:2047-217X
Container-title:GigaScience
language:en
Short-container-title:GigaSci

Author:

Matasci Naim,Hung Ling-Hong,Yan Zhixiang,Carpenter Eric J,Wickett Norman J,Mirarab Siavash,Nguyen Nam,Warnow Tandy,Ayyampalayam Saravanaraj,Barker Michael,Burleigh J Gordon,Gitzendanner Matthew A,Wafula Eric,Der Joshua P,dePamphilis Claude W,Roure Béatrice,Philippe Hervé,Ruhfel Brad R,Miles Nicholas W,Graham Sean W,Mathews Sarah,Surek Barbara,Melkonian Michael,Soltis Douglas E,Soltis Pamela S,Rothfels Carl,Pokorny Lisa,Shaw Jonathan A,DeGironimo Lisa,Stevenson Dennis W,Villarreal Juan Carlos,Chen Tao,Kutchan Toni M,Rolf Megan,Baucom Regina S,Deyholos Michael K,Samudrala Ram,Tian Zhijian,Wu Xiaolei,Sun Xiao,Zhang Yong,Wang Jun,Leebens-Mack Jim,Wong Gane Ka-Shu

Publisher

Oxford University Press (OUP)

Subject

Computer Science Applications,Health Informatics

Link

http://link.springer.com/content/pdf/10.1186/2047-217X-3-17.pdf

Reference22 articles.

1. Goff SA, Vaughn M, McKay S, Lyons E, Stapleton AE, Gessler D, Matasci N, Wang L, Hanlon M, Lenards A, Muir A, Merchant N, Lowry S, Mock S, Helmke M, Kubach A, Narro M, Hopkins N, Micklos D, Hilgert U, Gonzales M, Jordan C, Skidmore E, Dooley R, Cazes J, McLay R, Lu Z, Pasternak S, Koesterke L, Piel WH: The iPlant Collaborative: Cyberinfrastructure for Plant Biology. Front Plant Sci. 2011, 2: 34-

2. 1KP BLAST Search Portal. [ http://www.bioinfodata.org/app/Blast4OneKP/home ]

3. Johnson MT, Carpenter EJ, Tian Z, Bruskiewich R, Burris JN, Carrigan CT, Chase MW, Clarke ND, Covshoff S, dePamphilis CW, Edger PP, Goh F, Graham S, Greiner S, Hibberd JM, Jordon-Thaden I, Kutchan TM, Leebens-Mack J, Melkonian M, Miles N, Myburg H, Patterson J, Pires JC, Ralph P, Rolf M, Sage RF, Soltis D, Soltis P, Stevenson D, Stewart CN: Evaluating methods for isolating total RNA and predicting the success of sequencing phylogenetically diverse plant transcriptomes. PLoS One. 2012, 7: e50226-10.1371/journal.pone.0050226.

4. Xie Y, Wu G, Tang J, Luo R, Patterson J, Liu S, Huang W, He G, Gu S, Li S, Zhou X, Lam TW, Li Y, Xu X, Wong GK, Wang J: SOAPdenovo-Trans: De novo transcriptome assembly with short RNA-Seq reads. Bioinformatics. 2014, 30: 1660-1666. 10.1093/bioinformatics/btu077.

5. Wickett NJ, Mirarab S, Nguyen N, Warnow T, Carpenter E, Matasci N, Ayyampalayam S, Barker M, Burleigh JG, Gitzendanner MA, Ruhfel B, Wafula E, Der JP, Graham SW, Mathews S, Melkonian M, Soltis DE, Soltis PS, Miles NW, Rothfels C, Pokorny L, Shaw AJ, deGironimo L, Stevenson DW, Surek B, Villarreal JC, Roure B, Philippe H, dePamphilis CW, Chen T: A phylotranscriptomics analysis of the origin and early diversification of land plants. Proc Natl Acad Sci U S A. IN PRESS

Cited by 509 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Leaf transcriptomes from C3, C3-C4 intermediate, and C4 Neurachne species give insights into C4 photosynthesis evolution;Plant Physiology;2024-08-16

2. Shifts in evolutionary lability underlie independent gains and losses of root-nodule symbiosis in a single clade of plants;Nature Communications;2024-05-27

3. Plant genome information facilitates plant functional genomics;Planta;2024-04-09

4. Adaptive evolution of chloroplast division mechanisms during plant terrestrialization;Cell Reports;2024-03

5. Comparative analysis of SPL transcription factors from streptophyte algae and embryophytes reveals evolutionary trajectories of SPL family in streptophytes;Scientific Reports;2024-01-18