CGtag: complete genomics toolkit and annotation in a cloud-based Galaxy-Reference-Cited by-同舟云学术

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CGtag: complete genomics toolkit and annotation in a cloud-based Galaxy

Published:2014-01-24 Issue:1 Volume:3 Page:
ISSN:2047-217X
Container-title:GigaScience
language:en
Short-container-title:GigaSci

Author:

Hiltemann Saskia,Mei Hailiang,de Hollander Mattias,Palli Ivo,van der Spek Peter,Jenster Guido,Stubbs Andrew

Publisher

Oxford University Press (OUP)

Subject

Computer Science Applications,Health Informatics

Link

http://link.springer.com/content/pdf/10.1186/2047-217X-3-1.pdf

Reference21 articles.

1. Drmanac R, Sparks AB, Callow MJ, Halpern AL, Burns NL, Kermani BG, Carnevali P, Nazarenko I, Nilsen GB, Yeung G, Dahl F, Fernandez A, Staker B, Pant KP, Baccash J, Borcherding AP, Brownley A, Cedeno R, Chen L, Chernikoff D, Cheung A, Chirita R, Curson B, Ebert JC, Hacker CR, Hartlage R, Hauser B, Huang S, Jiang Y, Karpinchyk V: Human genome sequencing using unchained base reads on self-assembling DNA nanoarrays. Science. 2010, 327 (5961): 78-81. 10.1126/science.1181498.

2. CGATools. [ http://cgatools.sourceforge.net/ ]

3. Goecks J, Nekrutenko A, Taylor J, The Galaxy Team: Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. Genome Biol. 2010, 11 (8): R86-10.1186/gb-2010-11-8-r86.

4. Blankenberg D, Von Kuster G, Coraor N, Ananda G, Lazarus R, Mangan M, Nekrutenko A, Taylor J: Galaxy: a web-based genome analysis tool for experimentalists. Curr Protoc Mol Biol. 2010, 89: 19.10.1-19.10.21.

5. Giardine B, Riemer C, Hardison RC, Burhans R, Elnitski L, Shah P, Zhang Y, Blankenberg D, Albert I, Taylor J, Miller W, Kent WJ, Nekrutenko A: Galaxy: a platform for interactive large-scale genome analysis. Genome Res. 2005, 15 (10): 1451-1455. 10.1101/gr.4086505.

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