Does pathway analysis make it easier for common variants to tag rare ones?-Reference-Cited by-同舟云学术

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Does pathway analysis make it easier for common variants to tag rare ones?

Published:2011-11-29 Issue:S9 Volume:5 Page:
ISSN:1753-6561
Container-title:BMC Proceedings
language:en
Short-container-title:BMC Proc

Author:

Uh Hae-Won,Tsonaka Roula,Houwing-Duistermaat Jeanine J

Publisher

Springer Science and Business Media LLC

Subject

General Biochemistry, Genetics and Molecular Biology,General Medicine

Link

http://link.springer.com/content/pdf/10.1186/1753-6561-5-S9-S90.pdf

Reference13 articles.

1. Asimit J, Zeggini E: Rare variant association analysis methods for complex traits. Annu Rev Genet. 2010, 44: 293-308. 10.1146/annurev-genet-102209-163421.

2. Tian L, Greenberg SA, Kong SW, Altschuler J, Kohane IS, Park PJ: Discovering statistically significant pathways in expression profiling studies. Proc Natl Acad Sci USA. 2005, 102: 13,544-13,549. 10.1073/pnas.0506577102.

3. Goeman JJ, Bühlmann P: Analyzing gene expression data in terms of gene sets: methodological issues. Bioinformatics. 2007, 23: 980-987. 10.1093/bioinformatics/btm051.

4. Chen LS, Hutter CM, Potter JD, Liu Y, Prentice RL, Peters U, Hsu L: Insights into colon cancer etiology using a regularized approach to gene set analysis of GWAS data. Am J Hum Genet. 2010, 86: 860-871. 10.1016/j.ajhg.2010.04.014.

5. Almasy LA, Dyer TD, Peralta JM, Kent JW, Charlesworth JC, Curran JE, Blangero J: Genetic Analysis Workshop 17 mini-exome simulation. BMC Proc. 2011, 5 (suppl 9): S2-10.1186/1753-6561-5-S9-S2.

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1. A Review of Pathway Databases and Related Methods Analysis;Current Bioinformatics;2020-10-14

2. Pathway analysis of complex diseases for GWAS, extending to consider rare variants, multi-omics and interactions;Biochimica et Biophysica Acta (BBA) - General Subjects;2017-02

3. Pathway-based approach using hierarchical components of collapsed rare variants;Bioinformatics;2016-09-01

4. Pathway analysis with next-generation sequencing data;European Journal of Human Genetics;2014-07-02

5. Adaptive clustering and adaptive weighting methods to detect disease associated rare variants;European Journal of Human Genetics;2012-07-11

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