Big Data in multiscale modelling: from medical image processing to personalized models

Abstract

AbstractThe healthcare industry is different from other industries–patient data are sensitive, their storage needs to be handled with care and in compliance with regulative, while prediction accuracy needs to be high. This fast expansion in medical image modalities and data collection leads to generation of so called “Big Data” which is time-consuming to be analyzed by medical experts. This paper provides an insight into the Big Data from the aspect of its role in multiscale modelling. Special attention is paid to the workflow, starting from medical image processing all the way to creation of personalized models and their analysis. A review of literature regarding Big Data in healthcare is provided and two proposed solutions are described–carotid artery ultrasound image processing and 3D reconstruction, and drug testing on personalized heart models. Related to the carotid artery ultrasound image processing, the starting point is ultrasound images, which are segmented using convolutional neural network U-net, while segmented masks were further used in 3D reconstruction of geometry. Related to the drug testing on personalized heart model, similar approach was proposed, images were used in creation of personalized 3D geometrical model that is used in computational modelling to determine pressure in the left ventricle before and after drug testing. All the aforementioned methodologies are complex, include Big Data analysis and should be performed using servers or high-performance computing. Future development of Big Data applications in healthcare domains offers a lot of potential due to new data standards, rapid development of research and technology, as well as strong government incentives.