Gapless genome assembly of Colletotrichum higginsianum reveals chromosome structure and association of transposable elements with secondary metabolite gene clusters-Reference-Cited by-同舟云学术

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Gapless genome assembly of Colletotrichum higginsianum reveals chromosome structure and association of transposable elements with secondary metabolite gene clusters

Published:2017-08-29 Issue:1 Volume:18 Page:
ISSN:1471-2164
Container-title:BMC Genomics
language:en
Short-container-title:BMC Genomics

Author:

Dallery Jean-Félix,Lapalu Nicolas,Zampounis Antonios,Pigné Sandrine,Luyten Isabelle,Amselem Joëlle,Wittenberg Alexander H. J.,Zhou Shiguo,de Queiroz Marisa V.,Robin Guillaume P.,Auger Annie,Hainaut Matthieu,Henrissat Bernard,Kim Ki-Tae,Lee Yong-Hwan,Lespinet Olivier,Schwartz David C.,Thon Michael R.,O’Connell Richard J.

Funder

Agence Nationale de la Recherche

Ministerio de Economía y Competitividad

National Human Genome Research Institute

Publisher

Springer Science and Business Media LLC

Subject

Genetics,Biotechnology

Link

http://link.springer.com/content/pdf/10.1186/s12864-017-4083-x.pdf

Reference122 articles.

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2. Thomma BPHJ, Seidl MF, Shi-Kunne X, Cook DE, Bolton MD, van Kan JAL, Faino L. Mind the gap; seven reasons to close fragmented genome assemblies. Fungal Genet Biol. 2016;90:24–30.

3. Treangen TJ, Salzberg SL. Repetitive DNA and next-generation sequencing: computational challenges and solutions. Nat Rev Genet. 2012;13(1):36–46.

4. Koren S, Schatz MC, Walenz BP, Martin J, Howard JT, Ganapathy G, Wang Z, Rasko DA, McCombie WR, Jarvis ED, et al. Hybrid error correction and de novo assembly of single-molecule sequencing reads. Nat Biotech. 2012;30(7):693–700.

5. Seidl MF, Faino L, Shi-Kunne X, van den Berg GC, Bolton MD, Thomma BP. The Genome of the Saprophytic Fungus Verticillium tricorpus Reveals a Complex Effector Repertoire Resembling That of Its Pathogenic Relatives. Mol Plant Microbe Interact. 2015;28(3):362–73.

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