iTAR: a web server for identifying target genes of transcription factors using ChIP-seq or ChIP-chip data-Reference-Cited by-同舟云学术

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iTAR: a web server for identifying target genes of transcription factors using ChIP-seq or ChIP-chip data

Published:2016-08-12 Issue:1 Volume:17 Page:
ISSN:1471-2164
Container-title:BMC Genomics
language:en
Short-container-title:BMC Genomics

Author:

Yang Chia-Chun,Andrews Erik H.,Chen Min-Hsuan,Wang Wan-Yu,Chen Jeremy J. W.,Gerstein Mark,Liu Chun-Chi,Cheng Chao

Funder

American Cancer Society Research grant

the Centers of Biomedical Research Excellence (COBRE) grant

the Taiwan Ministry of Science and Technology

Publisher

Springer Science and Business Media LLC

Subject

Genetics,Biotechnology

Link

http://link.springer.com/content/pdf/10.1186/s12864-016-2963-0

Reference21 articles.

1. Butler JE, Kadonaga JT. The RNA polymerase II core promoter: a key component in the regulation of gene expression. Genes Dev. 2002;16(20):2583–92.

2. Maston GA, Evans SK, Green MR. Transcriptional regulatory elements in the human genome. Annu Rev Genomics Hum Genet. 2006;7:29–59.

3. Lemon B, Tjian R. Orchestrated response: a symphony of transcription factors for gene control. Genes Dev. 2000;14(20):2551–69.

4. ENCODE Project Consortium. The ENCODE (ENCyclopedia Of DNA Elements) Project. Science. 2004;306(5696):636–640.

5. Bernstein BE, Birney E, Dunham I, Green ED, Gunter C, Snyder M. An integrated encyclopedia of DNA elements in the human genome. Nature. 2012;489(7414):57–74.

Cited by 2 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. A New Weighted Imputed Neighborhood-Regularized Tri-Factorization One-Class Collaborative Filtering Algorithm: Application to Target Gene Prediction of Transcription Factors;IEEE/ACM Transactions on Computational Biology and Bioinformatics;2021-01-01

2. Target Gene Prediction of Transcription Factor Using a New Neighborhood-regularized Tri-factorization One-class Collaborative Filtering Algorithm;Proceedings of the 2018 ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics;2018-08-15

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