A comprehensive and scalable database search system for metaproteomics-Reference-Cited by-同舟云学术

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A comprehensive and scalable database search system for metaproteomics

Published:2016-08-16 Issue:1 Volume:17 Page:
ISSN:1471-2164
Container-title:BMC Genomics
language:en
Short-container-title:BMC Genomics

Author:

Chatterjee Sandip,Stupp Gregory S.,Park Sung Kyu Robin,Ducom Jean-Christophe,Yates John R.,Su Andrew I.,Wolan Dennis W.

Funder

National Cancer Institute

National Institute of General Medical Sciences

National Center for Advancing Translational Sciences

National Institute of Mental Health

National Heart, Lung, and Blood Institute

Publisher

Springer Science and Business Media LLC

Subject

Genetics,Biotechnology

Link

http://link.springer.com/content/pdf/10.1186/s12864-016-2855-3.pdf

Reference38 articles.

1. Hettich RL, Pan C, Chourey K, Giannone RJ. Metaproteomics: harnessing the power of high performance mass spectrometry to identify the suite of proteins that control metabolic activities in microbial communities. Anal Chem. 2013;85(9):4203–14.

2. Hettich RL, Sharma R, Chourey K, Giannone RJ. Microbial metaproteomics: identifying the repertoire of proteins that microorganisms use to compete and cooperate in complex environmental communities. Curr Opin Microbiol. 2012;15(3):373–80.

3. Eng JK, Mccormack AL, Yates JR. An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database. J Amer Soc Mass Spec. 1994;5(11):976–89.

4. Clauser KR, Baker P, Burlingame AL. Role of accurate mass measurement (+/− 10 ppm) in protein identification strategies employing MS or MS/MS and database searching. Anal Chem. 1999;71(14):2871–82.

5. Perkins DN, Pappin DJC, Creasy DM, Cottrell JS. Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis. 1999;20(18):3551–67.

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