Comparison of normalization methods for the analysis of metagenomic gene abundance data-Reference-Cited by-同舟云学术

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Comparison of normalization methods for the analysis of metagenomic gene abundance data

Published:2018-04-20 Issue:1 Volume:19 Page:
ISSN:1471-2164
Container-title:BMC Genomics
language:en
Short-container-title:BMC Genomics

Author:

Pereira Mariana Buongermino,Wallroth Mikael,Jonsson Viktor,Kristiansson Erik

Funder

Vetenskapsrådet

Göteborgs Universitet

Knut och Alice Wallenbergs Stiftelse

Svenska Forskningsrådet Formas

Publisher

Springer Science and Business Media LLC

Subject

Genetics,Biotechnology

Link

http://link.springer.com/content/pdf/10.1186/s12864-018-4637-6.pdf

Reference55 articles.

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3. Kim Y, Koh IS, Rho M. Deciphering the human microbiome using next-generation sequencing data and bioinformatics approaches. Methods. 2015; 79-80:52–9. https://doi.org/10.1016/j.ymeth.2014.10.022 .

4. Kristiansson E, Fick J, Janzon A, Grabic R, Rutgersson C, So H, Larsson DGJ. Pyrosequencing of Antibiotic-Contaminated River Sediments Reveals High Levels of Resistance and Gene Transfer Elements. PloS ONE. 2011; 6(2):17038. https://doi.org/10.1371/journal.pone.0017038 .

5. Qin J, Li Y, Cai Z, Li S, Zhu J, Zhang F, Liang S, Zhang W, Guan Y, Shen D, Peng Y, Zhang D, Jie Z, Wu W, Qin Y, Xue W, Li J, Han L, Lu D, Wu P, Dai Y, Sun X, Li Z, Tang A, Zhong S, Li X, Chen W, Xu R, Wang M, Feng Q, Gong M, Yu J, Zhang Y, Zhang M, Hansen T, Sanchez G, Raes J, Falony G, Okuda S, Almeida M, LeChatelier E, Renault P, Pons N, Batto JM, Zhang Z, Chen H, Yang R, Zheng W, Yang H, Wang J, Ehrlich SD, Nielsen R, Pedersen O, Kristiansen K. A metagenome-wide association study of gut microbiota in type 2 diabetes. Nature. 2012; 490(7418):55–60. https://doi.org/10.1038/nature11450 .

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