ChimPipe: accurate detection of fusion genes and transcription-induced chimeras from RNA-seq data-Reference-Cited by-同舟云学术

ChimPipe: accurate detection of fusion genes and transcription-induced chimeras from RNA-seq data

Published:2017-01-03 Issue:1 Volume:18 Page:
ISSN:1471-2164
Container-title:BMC Genomics
language:en
Short-container-title:BMC Genomics

Author:

Rodríguez-Martín Bernardo,Palumbo Emilio,Marco-Sola Santiago,Griebel Thasso,Ribeca Paolo,Alonso Graciela,Rastrojo Alberto,Aguado Begoña,Guigó Roderic,Djebali Sarah^ORCID

Funder

National Human Genome Research Institute

Seventh Framework Programme

Obra Social Fundaci?n la Caixa under Severo Ochoa 2014 program

Ministerio de Agricultura y Desarrollo Rural

Ministerio de Econom?a y Competitividad

Fundaci?n Ram?n Areces

Publisher

Springer Science and Business Media LLC

Subject

Genetics,Biotechnology

Link

http://link.springer.com/content/pdf/10.1186/s12864-016-3404-9.pdf

Reference57 articles.

1. Gingeras TR. Implications of chimaeric non-co-linear transcripts. Nature. 2009; 461:206–11.

2. Mitelman F, Johansson B, Mertens F. The impact of translocations and gene fusions on cancer causation. Nat Rev Cancer. 2007; 7:233–45.

3. Akiva P, Toporik A, Edelheit S, Peretz Y, Diber A, Shemesh R, et al.Transcription-mediated gene fusion in the human genome. Genome Res. 2006; 16:30–6.

4. Parra G, Reymond A, Dabbouseh N, Dermitzakis ET, Castelo R, Thomson TM, et al.Tandem chimerism as a means to increase protein complexity in the human genome. Genome Res. 2006; 16:37–44.

5. Unneberg P, Claverie JM. Tentative mapping of transcription-induced interchromosomal interaction using chimeric EST and mRNA data. PLoS ONE. 2007; 2:e254.

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