CoSpliceNet: a framework for co-splicing network inference from transcriptomics data-Reference-Cited by-同舟云学术

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CoSpliceNet: a framework for co-splicing network inference from transcriptomics data

Published:2016-10-28 Issue:1 Volume:17 Page:
ISSN:1471-2164
Container-title:BMC Genomics
language:en
Short-container-title:BMC Genomics

Author:

Aghamirzaie Delasa,Collakova Eva,Li Song,Grene Ruth

Funder

National Science Foundation

Genetics, Bioinformatics, and Computational Biology

NIFA, USDA

Publisher

Springer Science and Business Media LLC

Subject

Genetics,Biotechnology

Link

http://link.springer.com/content/pdf/10.1186/s12864-016-3172-6.pdf

Reference67 articles.

1. Carvalho RF, Feijão CV, Duque P. On the physiological significance of alternative splicing events in higher plants. Protoplasma. 2013;250:639–50.

2. Hubé F, Francastel C. Mammalian introns: when the junk generates molecular diversity. Int J Mol Sci. 2015;16:4429–52.

3. Santosh B, Varshney A, Yadava PK. Non‐coding RNAs: biological functions and applications. Cell Biochem Funct. 2015;33:14–22.

4. Reddy AS, Marquez Y, Kalyna M, Barta A. Complexity of the alternative splicing landscape in plants. Plant Cell. 2013;25:3657–83.

5. Marquez Y, Höpfler M, Ayatollahi Z, Barta A, Kalyna M. Unmasking alternative splicing inside protein-coding exons defines exitrons and their role in proteome plasticity. Genome Res. 2015;25:995–1007.

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2. Computational approaches for detecting disease-associated alternative splicing events;Briefings in Bioinformatics;2023-03-28

3. Co-expression network of heat-response transcripts: A glimpse into how splicing factors impact rice basal thermotolerance;Frontiers in Molecular Biosciences;2023-02-02

4. acorde unravels functionally interpretable networks of isoform co-usage from single cell data;Nature Communications;2022-04-05

5. Challenges and opportunities in network-based solutions for biological questions;Briefings in Bioinformatics;2021-11-24

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